Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0449 ATGGCTGATCCAAATACATCAGCTTTGATAGTATCTTCAGAATCCTCTGAACAAAGTGGAACACATATGATGAATCCAAGTGCGAATCCTCTTCAACCTCTTCTAAATCAGCAAGGTCGAACCTCCCCACATGGTTCTGTGGCTATCCTTTGGGACATTGAGAATTGCCCTGTCCCAAGTGATGTGCGGCCTGAAGATGTAGCTGGCAATATCCGAATGGCACTGCGTGTCCATCCTGTAATTAGAGGTGCTGTAACCATGTTTTCTGCATATGGGGATTTTAATGCCTTTCCCAGGCGGCTCAGAGAGGGCTGCCAGAGAACAGGAGTCAAACTCATAGATGTTCCAAATGGGAGGAAGGATGCAGCTGACAAAGCTATCTTAGTTGACATGTTCCTGTTTGCCCTTGACAATCCTCCACCTTCTTCCATCATGCTGATATCTGGGGATGTTGATTTTGCTCCTGCACTTCACATACTTGGTCAACGTGGATATACTGTCATTCTAGTAATTCCTTCTGGAGTGGGTGTGGCATCTGCCCTGTGCAATGCTGGAAGGTTTGTTTGGGACTGGCCTAGTGTGGCTCGTGGGGAAGGCTTTGTGCCTCCCACCAAGGTTTTGATCCCCCCTCGTGGAGGAACAGCTGATATTGCTGGGTGTCTCATGGGTTGCCATATCAATGACAATCCAGATGGACAAAATGAAGAAGAGGCAATTGTATATAGGGGAATGTCACAAGGTTATTATAGCACAAGGGATTTCTCAATAATATCACAATCCTTATCTGAATTCAACAGTACTTCTTCAATCACCATGTCTTGTTTTCCTCCGACTTTGAGGTCACAAAGCCTCCCATCTGGTTTGAATGAAGCTTCAGCAGGACCTATTTCTTATGGTGAACAAAATGAATCCACCTTGTGGGTGCAGCCTGGGGACCTAAATGGACTAAAGGCACAGCTGGTAAAACTGCTTGAACTATCAGGAGGGTGCCTGCCTCTTGCCCGCATTCCTTCTGACTACCAGAAACTCTTTGGACGGCCTCTTTATGTTTCAGAATATGGAGCTTTCAAGCTTGTGAATCTTTTCAAGAAGATGGCTGATACATTGGCCGTAGAGGGGAAGGGCCATAGGAAGCTTGTCTACCTCCGAAACTCGAAGGCTGGCCCAAGTGCTCCTCCATTGATAATGGCAAGGAAGGAGAAGAAAGGGAAGGGGATCCAGGAGGAGAACATGGATAATATCACTGGCTGTGGGTCTTCAGATGAGTTCTCAGATGATGAAAGAGTGGTTGTAGAAGAACATGATGAGAGAAGGAGAGAAGAAAAGTTTGGTCTGTTGGCTTCTAGATGTGAAATCAATGATCAAAATATTGAACAGTTCAAACATGAGTTGCAAGAGATCCTAGTGAGCTATTCTTGTCGGATTTTCCTGGGTTGTTTTGAGGCAATATACCAACAAAGGTACAAGAAACCACTGGACTATCGAAAGTTTGGTGTGAATGAGTTAGAGGGGTTGTTTGACAAGGTGAAGGATGTTGTCGTGTTGCATGAGGAACCAGTAACCAAGAGGAAGTTCCTTGATGCAGTTGGTGGCTAG 1596 0.4549 MADPNTSALIVSSESSEQSGTHMMNPSANPLQPLLNQQGRTSPHGSVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIRGAVTMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPSGVGVASALCNAGRFVWDWPSVARGEGFVPPTKVLIPPRGGTADIAGCLMGCHINDNPDGQNEEEAIVYRGMSQGYYSTRDFSIISQSLSEFNSTSSITMSCFPPTLRSQSLPSGLNEASAGPISYGEQNESTLWVQPGDLNGLKAQLVKLLELSGGCLPLARIPSDYQKLFGRPLYVSEYGAFKLVNLFKKMADTLAVEGKGHRKLVYLRNSKAGPSAPPLIMARKEKKGKGIQEENMDNITGCGSSDEFSDDERVVVEEHDERRREEKFGLLASRCEINDQNIEQFKHELQEILVSYSCRIFLGCFEAIYQQRYKKPLDYRKFGVNELEGLFDKVKDVVVLHEEPVTKRKFLDAVGG* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0449 531 Gene3D - 312 381 IPR041966 -
Vvi3g0449 531 Gene3D - 452 523 IPR041966 -
Vvi3g0449 531 Gene3D - 40 191 - -
Vvi3g0449 531 CDD LOTUS 313 382 - -
Vvi3g0449 531 PANTHER LIMKAIN B LKAP 27 489 IPR024768 GO:0005777|GO:0010468
Vvi3g0449 531 ProSiteProfiles OST-type HTH domain profile. 456 530 IPR025605 -
Vvi3g0449 531 CDD LOTUS 457 519 - -
Vvi3g0449 531 Pfam NYN domain 47 187 IPR021139 GO:0004540
Vvi3g0449 531 CDD PIN_limkain_b1_N_like 47 172 - -
Vvi3g0449 531 ProSiteProfiles OST-type HTH domain profile. 312 386 IPR025605 -
Vvi3g0449 531 Pfam OST-HTH/LOTUS domain 457 519 IPR025605 -
Vvi3g0449 531 Pfam OST-HTH/LOTUS domain 313 380 IPR025605 -
Vvi3g0449 531 MobiDBLite consensus disorder prediction 1 40 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0449 45 197 C2H2 Transcription Factor Family AT5G61190 43.137 3.83e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0449 - - vvi:104878785 1067.76