Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0444 ATGGCGGTGTACGGAGCTGCCGCCGTTCTGGGATCACTGGTTTTTCTTGGAATGCAGCTTCCACTAGTGATGGGAGATTGCCCTTTGGATTTGAGTGGGTCAAATTTTACTCTGGTGGCCTCTGTATGCGCTAATAAAGTTGATAGAGGAAAGTGCTGTCGCTATATTAATGCCTTTATTGCAATTTCTGTTGCTCGTTATGCAAATAAAACTAGTACCTTGGGGGTTGCTTCAAATTTATCTGATATTTGCCTTCATTCAATATCGGAGACCTTAGAACTATATGGAGTTCCACCAAATGCAACAGTTTTCTGCGGGTTTGGGACGAAGATTCCTGTTAATTATGATTGTAAGGGTCGAACAACTGTGGTGCAGATGCTGGAGTCCCCAAGATTTTCCGATGTCGCAGATAATTGCAAAGTGCCCCTTTCAGAGGAAAGCAAATGCAAAAAATGTTTAAATGCAGGAATTAGCTATCTTCATCGCCTGCTAGGAGCAGAAAACAATATGACACTGAGTACATGCAGGGATGCAACTTTTGCTGCACTTGCAAGCCAAGTTGACAACACATCAGCTGTTGATATTGCAAGCTGTTTCTTTGGCATTCAAGGGCTGAGTATTTCTCCAGAACCACCACCACCTGTGCACACTCCTGAGGTGTCTCCTAGTCCATTGGTTGCTGCCAGCCCTAGCCAGGTTGTCTCCACCGTAACCCGTGATGAAAATCACCATCCCTACCACCTCACGTTAATTCCAGGTGTTGGCATTGCAGTCACTGCCGTTGCTGTTATAATGCTGGTAGTCTTGATAATTCTCATACGTAAGAAAAACAGAGAGCTAGAGAATTTTGAGAATACTGGCAAGACTTCTTCAAAAGACTTCCCCCCTCCTCCTCGGCCTATAAGAAAACTTCAAGAAGGTTCTTCATCTATGTTTCAGAAGTATAGCTACAAGGAGACAAAGAAGGCAACTAACAATTTCAACACTATCGTTGGACAAGGAGGATTTGGAACTGTGTACAAAGCTCAGTTTAGGGATGGTTCAGTGGCAGCAGTTAAGCGAATGAACAAAGTTTCGGAGCAGGGGGAGGATGAATTCTGCCAAGAGATAGAGCTTCTTGCCAGACTGCATCATCGTCATCTTGTTGCCTTGAGAGGCTTTTGCATTGAAAAACATAATAGGTTTCTCATGTACGAGTATATGGAAAATGGAAGCTTAAAGGATCATCTTCATTCTCCAGGTAGAACTCCACTAAGTTGGCAGACAAGAATCCAAATTGCAATTGACGTGGCAAATGCTCTGGAGTATCTCCATTTCTATTGTGATCCTCCACTTTGCCACAGAGACATCAAGTCCAGCAACATCTTACTAGATGAGAATTTTGTCGCCAAGGTTGCAGATTTTGGTCTTGCACATGCTTCAAAAGATGGTTCCATTTGCTTTGAACCGGTAAACACTGATGTTCGGGGTACTCCAGGTTATATGGATCCTGAATATGTGATCACTCAAGAGCTCACCGAGAAAAGTGATGTGTACAGTTATGGTGTGGTACTATTGGAGCTTGTGACTGCAAGACGAGCGATACAAGACAACAAGAATTTGGTAGAATGGTCCCAAATATTCATGGCATCAGAATCAAGACTAGCCGAACTAGTGGACCCCAGTATTGGGGACTCCTTTGATTTTGATCAGCTTCAAACAGTTGTGACGATTGTGAGATGGTGCACACAAGGAGAAGCGAGAGCTAGGCCTTCAATTAAACAAGTCCTAAGGCTTTTGTATGAGAGTTCAGATCCAATGCATAATGGGTTTGTGCAAGCTGTGGAAGACGAAGAGTATGAAGAAACTGAAGAGAGGGGAAGGACAAGCAAAGGAAAAATGAATAGGGGTGATGGGATTTTTCACAGTGGGGATGGGCGATGTCTTGCTTCTTCTTCAAGTACATCTAGGTCATATTGTAGTAGAAGCTTTTTACTTGAAAATGGCTCTCCACAATCTCCTTCTGGTATACTCTCTGTTTGA 2022 0.4332 MAVYGAAAVLGSLVFLGMQLPLVMGDCPLDLSGSNFTLVASVCANKVDRGKCCRYINAFIAISVARYANKTSTLGVASNLSDICLHSISETLELYGVPPNATVFCGFGTKIPVNYDCKGRTTVVQMLESPRFSDVADNCKVPLSEESKCKKCLNAGISYLHRLLGAENNMTLSTCRDATFAALASQVDNTSAVDIASCFFGIQGLSISPEPPPPVHTPEVSPSPLVAASPSQVVSTVTRDENHHPYHLTLIPGVGIAVTAVAVIMLVVLIILIRKKNRELENFENTGKTSSKDFPPPPRPIRKLQEGSSSMFQKYSYKETKKATNNFNTIVGQGGFGTVYKAQFRDGSVAAVKRMNKVSEQGEDEFCQEIELLARLHHRHLVALRGFCIEKHNRFLMYEYMENGSLKDHLHSPGRTPLSWQTRIQIAIDVANALEYLHFYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKDGSICFEPVNTDVRGTPGYMDPEYVITQELTEKSDVYSYGVVLLELVTARRAIQDNKNLVEWSQIFMASESRLAELVDPSIGDSFDFDQLQTVVTIVRWCTQGEARARPSIKQVLRLLYESSDPMHNGFVQAVEDEEYEETEERGRTSKGKMNRGDGIFHSGDGRCLASSSSTSRSYCSRSFLLENGSPQSPSGILSV* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0444 673 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Vvi3g0444 673 MobiDBLite consensus disorder prediction 284 305 - -
Vvi3g0444 673 SUPERFAMILY Protein kinase-like (PK-like) 309 594 IPR011009 -
Vvi3g0444 673 MobiDBLite consensus disorder prediction 610 647 - -
Vvi3g0444 673 Pfam SPARK 25 170 IPR043891 -
Vvi3g0444 673 Gene3D Transferase(Phosphotransferase) domain 1 401 616 - -
Vvi3g0444 673 MobiDBLite consensus disorder prediction 617 633 - -
Vvi3g0444 673 ProSiteProfiles Protein kinase domain profile. 325 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0444 673 SMART serkin_6 325 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0444 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Vvi3g0444 673 CDD STKc_IRAK 331 593 - -
Vvi3g0444 673 FunFam Putative receptor-like protein kinase 298 400 - -
Vvi3g0444 673 PANTHER OS01G0750732 PROTEIN 172 623 - -
Vvi3g0444 673 Gene3D Phosphorylase Kinase; domain 1 308 400 - -
Vvi3g0444 673 FunFam Putative receptor-like protein kinase 401 601 - -
Vvi3g0444 673 Pfam Protein kinase domain 329 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0444 Vvi-Chr3 3822850 3829739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0444 22 672 Receptor kinase-like Gene Family AT3G19300 63.650 0.0 807
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Vvi3g0444 Pkinase 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0444 - - vvi:100257333 1274.61