Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0442 ATGCCTGGGAGTTTAGAGCCATTGGATGTGGGTGTTCAGATCCCATACCACTTCAGGTGTCCGATCTCGCTCGAGCTCATGTGTGACCCTGTCACCGTTAGCACGGGTCAGACCTACGACCGAGCCAGCATCGAGTACTGGGTCGGCACCGGCAACACCACCTGCCCCGTCACGCGGTCTTCTCTTACCGACTTCACCCTCATCCCCAACCACACCCTTCGCCGTCTCATCCAGGACTGGTGCGTTGCCAACCGGTCCTTTGGAGTTGAGCGTATTCCCACTCCCAAACAGCCTGCCGACCCAGCCTCGGTTCGGTCTCTGCAGACTCAGGTCTCTTCTCAGTCCAATCCTTCCCACACCAGGCTTTCGGCGGTGAAGCGACTCAGAGGACTCGCTCGTGACTCGGACAAAAACCGCTCTATCATTGGTTCGCATAATGTTCAGGAGGTTCTTCTCCCCGTTATTTTTTCGGATTCGGAGTGTGACTCGGCTGAGTTGAAGCATGAGTCACTCGCGCTTTTGGTGATGTTTCCTCTCTCTGAGTCGGAGTGCGCGTTCGTAGCGTCCCAGCCGGACCGAGTCGCGCATCTCGTGTCGCTCCTATTTCACGCATCGATCGAGGTTCGGGTCAACTCGGCCGCACTCATCGAGATCGTGGTCGCCGGAACCAGATCACTGGATCTCAGAGCTCAAATCAGCAATGTGGATGAAATCTTCGAAGGAATAACCGGAATTCTCAACTATCCATTGGCCTATCCTCGCGCGCTCAAAGTTGGAATCAAAGCCTTATTCGCCCTATGCCTGGCCAAGCAAAGCCGCCACAAGGCGGTCGCTGCCGGTGCTGTGACTGCTCTCATCGACCGATTGGCCGATTTTGAGAAGTGCGACGTGGAGCGAGCCCTGGCAACAGTGGAGCTGCTCTGCCGCGTTCCGGCGGGTTGCGCCGCCTTCGCAGCACACGCACTCACCGTGCCCCTCCTCGTGAGAAAAATTCTAAAAGTCTCCGACCGCGCAACGGAGTACGCTGCCGGAGCGCTGCTGTCGCTGTGCTCGGCGGCGGAGCAGAGCCAGAGAGAGGCGGTCTCCGCGGGGGTAGTGACTCAGCTTTTGCTGCTGGTACAAAGCGACTGTACGGAAAGAGCAAAGCGCAAAGCACAACTTTTGTTGAAGCTTCTTCGGGATTCGTGGCCAGAAGATTCGGTAGTCAATTCTGACGATTTTGGTTGCAGTGATGTTGTTCCATTTTGA 1248 0.5657 MPGSLEPLDVGVQIPYHFRCPISLELMCDPVTVSTGQTYDRASIEYWVGTGNTTCPVTRSSLTDFTLIPNHTLRRLIQDWCVANRSFGVERIPTPKQPADPASVRSLQTQVSSQSNPSHTRLSAVKRLRGLARDSDKNRSIIGSHNVQEVLLPVIFSDSECDSAELKHESLALLVMFPLSESECAFVASQPDRVAHLVSLLFHASIEVRVNSAALIEIVVAGTRSLDLRAQISNVDEIFEGITGILNYPLAYPRALKVGIKALFALCLAKQSRHKAVAAGAVTALIDRLADFEKCDVERALATVELLCRVPAGCAAFAAHALTVPLLVRKILKVSDRATEYAAGALLSLCSAAEQSQREAVSAGVVTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPEDSVVNSDDFGCSDVVPF* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0442 415 Gene3D - 98 403 IPR011989 -
Vvi3g0442 415 SUPERFAMILY ARM repeat 115 393 IPR016024 -
Vvi3g0442 415 SUPERFAMILY RING/U-box 11 88 - -
Vvi3g0442 415 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Vvi3g0442 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Vvi3g0442 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Vvi3g0442 415 CDD RING-Ubox_PUB 15 67 IPR045210 -
Vvi3g0442 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Vvi3g0442 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Vvi3g0442 415 PANTHER WDSAM1 PROTEIN 12 399 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0442 Vvi-Chr3 3794545 3795792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0442 1 415 U-box Gene Family AT1G49780 66.983 0.0 551