Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0441 ATGGCTGAAGGAGGAGGCCATGAGGGTTTCTTATGGGAAAACCAGTCATGGGGTTTCTCGAATTCGGATAACTCTGGGGGGAGTGATAAGAAATCTGGGGAGAAGCAACCTGGTTCGGCCTCTAATAGCCAGACTGCAGCCACGGGAATGGATTTGGTACCGCCTGATAAGAAGCGAGGGCGAGGCGGAGCCATCAAGAATGGAAAGAATGGAAAGGGAAGTGGTGAGGGGAATGAAGGAAAAAGCGGTGGTGGTGGTGGCGGTGAATCAGATCATGAGATACATATATGGACAGAGAGAGAAAGGCGGAAGAAGATGAGGAACATGTTTTCTAGTCTTCATGCTTTGCTTCCTCAACTTCCTCCAAAGGCAGACAAGTCCACCATTGTTGATGAAGCAGTGAACTACATCAAAACCCTACAGCACACACTCCAGAAGCTTCAAAAACAAAAGCTAGAAAGGCTTCAAGGTGCAACAACTGTCAACTATGAGCCATCAATAATCACGTCGCAAAAGCTAGCCTTCGACTCAAGGGAGGCTTTCTTAGCTGATCAAGGATCTTCCAGTAACTTAGCCATTACACCATCGAATTCTTCCAACTCTCTTTCAGTCGCTCGGGTTCCTGCAGTATTCCAATCATGGACTTCTCCTAATGTCACTTTGAATGTTTGTGGCAATGAAGCACAAATCAGCGTGTGCTCGCCGAAGAAGCCTGGTCTTTTAACCACCATCTGCTACGTGTTGGAGAAGCATAAACTAGAGGTGATATCTGCTCATGTTTCTTCAGACTATAACCGGAGCATGTACATGATCCAGACCAATGCGAATGGAGCTTTGGATCAGTTCCCTGTGGGATTTCCAATGGAAGAAGTCTACAAGCAAGCTGCAGGAGAGATAATGTTCTGGGCATCCTCTTGA 918 0.4684 MAEGGGHEGFLWENQSWGFSNSDNSGGSDKKSGEKQPGSASNSQTAATGMDLVPPDKKRGRGGAIKNGKNGKGSGEGNEGKSGGGGGGESDHEIHIWTERERRKKMRNMFSSLHALLPQLPPKADKSTIVDEAVNYIKTLQHTLQKLQKQKLERLQGATTVNYEPSIITSQKLAFDSREAFLADQGSSSNLAITPSNSSNSLSVARVPAVFQSWTSPNVTLNVCGNEAQISVCSPKKPGLLTTICYVLEKHKLEVISAHVSSDYNRSMYMIQTNANGALDQFPVGFPMEEVYKQAAGEIMFWASS* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0441 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 90 140 IPR011598 GO:0046983
Vvi3g0441 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 160 IPR036638 GO:0046983
Vvi3g0441 305 SMART finulus 98 146 IPR011598 GO:0046983
Vvi3g0441 305 CDD bHLH_AtbHLH_like 95 148 IPR045239 -
Vvi3g0441 305 Pfam Helix-loop-helix DNA-binding domain 98 141 IPR011598 GO:0046983
Vvi3g0441 305 Coils Coil 130 150 - -
Vvi3g0441 305 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 5 303 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vvi3g0441 305 MobiDBLite consensus disorder prediction 14 49 - -
Vvi3g0441 305 CDD ACT_UUR-ACR-like 229 280 - -
Vvi3g0441 305 MobiDBLite consensus disorder prediction 1 94 - -
Vvi3g0441 305 Gene3D - 88 157 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0441 Vvi-Chr3 3785857 3788100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0441 2 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 40.762 1.06e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi3g0441 HLH 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0441 - - vvi:100264010 514.612