Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0440 ATGCAAGGGCAAAGAAGTACCATTGGTTCCTTCTCTGAGACCATTGATTTTGGGCAGGGCTCTGTTTCCAATAACACTGGCATGAATCAGCAGACTTCGTGGAATAACATGCTAAATCCCGTTGATAGCCGGTTGTCAAACTATATGTTACCTTCCAATGAGGCAAATTTTACATGTGTAAATGCTGTCAATCATGATGTTCAAAACTTTAATGGCTGGCATTTGGGTGAATCTAGCTCTAGTATGAATCCACGAAACCAGGCGATTAATGCTGGTGTAAGAATGGAACACGGTAGGTCTTCATCTGGTACTCTTGCAGGGGCTGATCCTAATTTGGAAGACAGGCGACTTGATCTGGCTAATAGCCCTCTTCATGAGAGTGCCACTAGTGGCAATCAGATTACAAGGGGGCCTTTATTTATTCGGGGTTCCAGTTCTACTCGTATCCCTCTGAATGTAAATCTAAATGCTGAAATTGTGGGTAATTCTGGTAGTGGTGGGCAGGAAATGGGAGCAGGCCTGTGCAAGTCAGGTGGATTAGGAACAGAGCAGGTTTCACCTGTTAGTGCTTCTGCTGATAATATAGGGGCCTCTTCTGGAAGTTCTGGTTCTTTGATTGAGGAAAGCAATGGTGGATCAGGTTCTTCTTTGGGCAGTTGGGGCTTATCCTGCAAGAGAAAGGCTCTTGAAGGTACTTCTGGACAGTCTTATCCTAGTGGAAGTTCAAGCTGTTCTCCACAAGCTGAACCCAGTGCTTGGCTTGCTGTTCCTGCTCATTCTAATGCTTCTAACAGCTCAAGCATATCCACACCCTCAGGGAATTCTCTCAGTGTGAATCCTCCAGGGCTGCCAAACCAACAGTCTGGGATTGGCATGAGAGGTGTAGCTCCTTCTGATGTTTTTCCTTCTTTAAGTGTTACAGGAAATGCAGAAAACTCCCAGAGAAACTTTGGCAGGAGAGTAAATCCGGGACATCAACAGGAACCTGTGGCATTTAATTTATCATCAGCAGGAATTACTAGGCGTTCTAATGTTAGTTCCAATCATCAATCATCTAGGCCTCTGACATTTAGTGATTCTTTGGACTTGAGGCCAAGTGCAGCGGTAGCAGCCAATGCAAATGCACCCCAGATTGCTCCCCAGAGCCAGTCTCATGTACTACATATTCCTGGCTTGGCAAGAAATATGCATCCTTTTCCTTGGAGTGGGGCTTCCAATTCAAGAGCTGGCAGTTCATCACGTTCATTTAACTTTTCTAGGGAGAGAGCTGCTGTGTTACAAGAGGAAGCAAACCTAAGAAGCAACCACAGAAACAATGCAGAGCATCCCATGTTTATTCCTGCAACTGAGACTAGAAATTTGGCACAGGATCCAACACATTGGAGTTTGGCCACAGGAAATATTAGCACTAATGGAGGTGGTCCTTCAACTTCTCGAATGGGCCTGAGTTCAAGTGTTCATTCGTTGCCTACTGCTTGGATTCCTGTTCACAATCCCCCAACATCAAATCAGCAAAGATTATCAGAAATTGCTCCTTGGACTTTATTCCCATCTATTGAGTCTGAAGCTGGAGGTCTCAGTGGTCCTTTTTCATCATTGCCTTCTGGTCCTTCCGCTAACACACGGGAGACAGTTATATCAGCTGGAGCTATTAGCCAAGTCCATCAGCAAACATATCCAAGGTCTGCATTCTTGATGGAGAGGCAAGGAAATGATGTTCTTGGTATGCCCCATTCATTGCGTGCTTTAGCAGCTGACATAGAAGGGAGACACAGGCTAATATCTGAGATTCGTCAGGTTTTGACTGCCATGCGTAGGGGTGAGAGCTTGCGGGCTGAGGATAGGCACAGAGATATGCGGCTTGATGTCGATAATATGTCATATGAGGAACTACTGGATTTAGAAGAACGCATAGGAGACGTGAACACTGGATTGAGTGATGAAAAAATACTGAAGTGTATGAAAAGGCAAAAATATTCATCCAATCCAACACCTGAGGTGGAGCCATGTTGTATTTGCCAGGAAGAATATGCTGTTGGAGATGACCTTGGGATACTGGATTGTGGACATGACTTCCATACCAACTGCATCAAACAATGGTTAATGCAGAAGAATCTGTGCCCCATTTGTAAAACAACAGGCTTGGCTACATGA 2154 0.4489 MQGQRSTIGSFSETIDFGQGSVSNNTGMNQQTSWNNMLNPVDSRLSNYMLPSNEANFTCVNAVNHDVQNFNGWHLGESSSSMNPRNQAINAGVRMEHGRSSSGTLAGADPNLEDRRLDLANSPLHESATSGNQITRGPLFIRGSSSTRIPLNVNLNAEIVGNSGSGGQEMGAGLCKSGGLGTEQVSPVSASADNIGASSGSSGSLIEESNGGSGSSLGSWGLSCKRKALEGTSGQSYPSGSSSCSPQAEPSAWLAVPAHSNASNSSSISTPSGNSLSVNPPGLPNQQSGIGMRGVAPSDVFPSLSVTGNAENSQRNFGRRVNPGHQQEPVAFNLSSAGITRRSNVSSNHQSSRPLTFSDSLDLRPSAAVAANANAPQIAPQSQSHVLHIPGLARNMHPFPWSGASNSRAGSSSRSFNFSRERAAVLQEEANLRSNHRNNAEHPMFIPATETRNLAQDPTHWSLATGNISTNGGGPSTSRMGLSSSVHSLPTAWIPVHNPPTSNQQRLSEIAPWTLFPSIESEAGGLSGPFSSLPSGPSANTRETVISAGAISQVHQQTYPRSAFLMERQGNDVLGMPHSLRALAADIEGRHRLISEIRQVLTAMRRGESLRAEDRHRDMRLDVDNMSYEELLDLEERIGDVNTGLSDEKILKCMKRQKYSSNPTPEVEPCCICQEEYAVGDDLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLAT* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0440 717 SMART ring_2 670 710 IPR001841 -
Vvi3g0440 717 MobiDBLite consensus disorder prediction 1 31 - -
Vvi3g0440 717 MobiDBLite consensus disorder prediction 183 217 - -
Vvi3g0440 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 636 714 IPR013083 -
Vvi3g0440 717 Pfam Ring finger domain 670 711 IPR001841 -
Vvi3g0440 717 SUPERFAMILY RING/U-box 669 713 - -
Vvi3g0440 717 ProSiteProfiles Zinc finger RING-type profile. 670 711 IPR001841 -
Vvi3g0440 717 FunFam E3 ubiquitin-protein ligase MBR2 640 715 - -
Vvi3g0440 717 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 220 715 IPR045191 GO:0061630
Vvi3g0440 717 MobiDBLite consensus disorder prediction 261 286 - -
Vvi3g0440 717 MobiDBLite consensus disorder prediction 261 297 - -
Vvi3g0440 717 MobiDBLite consensus disorder prediction 335 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0440 Vvi-Chr3 3768918 3782237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0440 1 717 C3H Transcription Factor Family AT2G15530 39.491 1.58e-132 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0440 - - vvi:100258840 1291.17