Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0437 ATGGCATCTCCTGTGGAATCAGTCCAGTGCTTTGGGCGGAAGAAGACCGCCGTGGCTGTCACCTACTGTAAGCGCGGCCGAGGCCTCATCAAGATCAACGGCTGCCCAATCGAGCTGGTGGAGCCCGAGATCCTCCGCTACAAGGCGGTGGAGCCCATCCTCCTTCTCGGTCGCCACCGTTTCGCCGGCGTTGACATGCGCATCCGCGTGAAAGGTGGTGGTCACACCTCCCAGATTTACGCAATCCGCCAAAGCATTGCCAAAGCCCTCGTTGCCTTCTATCAGAAGTACGTCGATGAGCAATCCAAGAAGGAGATCAAGGACATCCTCGTTCGCTACGATCGTACCCTGCTTGTCGCTGATCCTAGGCGCTGCGAGCCAAAGAAGTTCGGTGGTCGTGGTGCTCGTGCAAGGTTCCAGAAATCGTATCGTTAG 435 0.5724 MASPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRYKAVEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0437 144 ProSitePatterns Ribosomal protein S9 signature. 72 90 IPR020574 GO:0003735|GO:0005840|GO:0006412
Vvi3g0437 144 FunFam 40S ribosomal protein S16 1 144 - -
Vvi3g0437 144 Gene3D - 2 144 IPR014721 -
Vvi3g0437 144 PANTHER RIBOSOMAL PROTEIN S9 6 141 IPR000754 GO:0003735|GO:0005840|GO:0006412
Vvi3g0437 144 Pfam Ribosomal protein S9/S16 12 144 IPR000754 GO:0003735|GO:0005840|GO:0006412
Vvi3g0437 144 SUPERFAMILY Ribosomal protein S5 domain 2-like 7 144 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0437 Vvi-Chr3 3718260 3718694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0437 5 144 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 88.571 1.04e-91 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0437 K02960 - vvi:100250286 289.656