Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0432 ATGGCGGCACAGGTTCAAGTTCAGCCTCAGGGTCCGGGACCCGCTCCCAACGGCGCGGCTGGCGCCGGTGGCAATCAGTTCGTAACGACGTCGTTGTATGTCGGCGACCTGGAGTTGAATGTCAACGATTCGCAGCTGTACGATCTGTTTAGCCAAATGGGAGCGGTGGTTTCCGTTCGGGTTTGCCGCGACTTGAGCACTCGAAGATCACTCGGTTATGGTTATGTTAATTATAGCAATCCCCAAGACGCTGCAAGGGCATTGGATGTGTTGAATTTCACTCCTCTCAATGGAAAGCCAATTAGGATTATGTATTCCCATCGTGACCCTAGTATCCGCAAAAGTGGAACTGGAAATATATTTATTAAGAATTTGGATAAAGGGATTGACCACAAAGCATTGCATGACACTTTTTCCGCATTTGGTAACATTCTCTCATGTAAGGTAGCCACTGATGCATCTGGAATGTCAAAAGGCCATGGTTTTGTACAATTTGATAGTGAGGAGGCTGCCCAGAAAGCAATTGACAAGCTGAATGGCATGCTTTTGAATGATAAGCAAGTTTTTGTGGGACCGTTTGTTCGTAAGCAGGAACGGGAGAGTACAATCAACAAGGAAAAATTCAATAATGTGTTTGTGAAAAATATCTCTGAAGGAATGACAGAAGAAGATCTGACGAGAATTTTTGGTGAATTTGGGCCAATCACTAGTGTTGTGGTGATGAGAGATGGTGATGGAAAATCAAAGTGCTTTGGATTTGTCAACTTTGAGAATGTGGATGATGCTGCTATGTCTGTTGAGGCTCTTAATGGGCAGAAATTTGATGATAAGGAGTGGTATGTTGGGAAGGCCCAGAAAAAATCTGAAAGGGAAATTGAATTAAAAAGTCGATTTGAACAGAATATGAAGGAGGCAGTTGACAAATTTCAAGGAGCAAACCTCTACATCAAAAATTTAGATGATAGCATTGGTGATGATAAACTAAAGGAATTGTTTGCTCAGTTTGGTACAATTACTTCATGCAAGGTTATGCGAGATCCCAATGGTTTAAGTAGAGGATCAGGGTTTGTTGCATTCTCATCTCCTGAGGAGGCATCTAGAGCTCTTGCTGAGATGAATAGCAAAATGGTTGTTAGCAAACCTTTATATGTTGCCCTTGCGCAACGTAAAGAAGATAGAAGAGCAAGGTTGCAGGCTCAATTTTCTCAAATGCGTCCTGTTCCAATGCCACCTTCCGTTGTTCCTCGTTTGCCAATGTATCCACCCAGTGGTCCTGGTCTTGGACAACAAATGTTCTACGGTCAAGCGCCACCTGCTATTATTCCTCCTCAACCTGGATTTGGGTATCAACAACAGCTTGTTCCTGGCATGAGGCCTGCTGGACCTCCTATGCCGAATTTCTTTGTGCCAATTGTTCAACAGGGGCAGCAGGGTCAGCGTCCAGGTGGCAGACGTGCTGGAGCTGTTCCTATGCAACAAACCCAGCAGCAAGTTCCCCTGATGCAGCAGCAGATGCTTCCAAGGGGGCGTGTCTTCCGCTACCCTCCAGGGCGTGGTCTATCCGATGTTCCAATGCCAGGTGTTGCTGGAGGCATGGTTTCTGTTCCATATGATATGGGTGGCATGCCATTGCATGATGCAGCAATATCTCAATCAATACCAGTCGGGGCTTTGGCTACGGCCCTTGCAAATGCTCCTCCTGCTGAGCAGCGGACGATGCTGGGTGAGAATTTATACCCACTTGTGGAGCAGCTGGAGCCTGAGATGGCAGCCAAAGTGACTGGCATGCTTCTTGAGATGGACCAGACCGAGGTCTTGCACTTGCTCGAGTCCCCTGATGCTCTGAAAGCCAAGGTTGCAGAGGCTATGGAGGTTCTGAGGAATGTGGCTCAGCAGCAGCAGGCTACCAATGCAGCTGATCAGTTGGGTTCTTTGTCTCTAGAATGA 1947 0.4674 MAAQVQVQPQGPGPAPNGAAGAGGNQFVTTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNSKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVPMPPSVVPRLPMYPPSGPGLGQQMFYGQAPPAIIPPQPGFGYQQQLVPGMRPAGPPMPNFFVPIVQQGQQGQRPGGRRAGAVPMQQTQQQVPLMQQQMLPRGRVFRYPPGRGLSDVPMPGVAGGMVSVPYDMGGMPLHDAAISQSIPVGALATALANAPPAEQRTMLGENLYPLVEQLEPEMAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRNVAQQQQATNAADQLGSLSLE* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0432 648 SUPERFAMILY PABC (PABP) domain 496 646 IPR036053 GO:0003723
Vvi3g0432 648 SMART rrm2_1 119 191 IPR003954 GO:0003676
Vvi3g0432 648 SMART rrm2_1 31 104 IPR003954 GO:0003676
Vvi3g0432 648 SMART rrm2_1 313 385 IPR003954 GO:0003676
Vvi3g0432 648 SMART rrm2_1 210 282 IPR003954 GO:0003676
Vvi3g0432 648 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676
Vvi3g0432 648 CDD RRM1_I_PABPs 31 110 IPR034364 -
Vvi3g0432 648 PANTHER RNA BINDING PROTEIN 29 92 - -
Vvi3g0432 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Vvi3g0432 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Vvi3g0432 648 FunFam Polyadenylate-binding protein 116 199 - -
Vvi3g0432 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 190 IPR000504 GO:0003723
Vvi3g0432 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Vvi3g0432 648 SUPERFAMILY RNA-binding domain, RBD 208 393 IPR035979 GO:0003676
Vvi3g0432 648 CDD RRM4_I_PABPs 311 389 - -
Vvi3g0432 648 FunFam Polyadenylate-binding protein 295 400 - -
Vvi3g0432 648 FunFam Polyadenylate-binding protein 200 294 - -
Vvi3g0432 648 FunFam Polyadenylate-binding protein 17 115 - -
Vvi3g0432 648 CDD RRM2_I_PABPs 116 192 IPR045305 -
Vvi3g0432 648 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 31 627 IPR006515 GO:0003723
Vvi3g0432 648 SMART poly_2 566 629 IPR002004 GO:0003723
Vvi3g0432 648 Pfam Poly-adenylate binding protein, unique domain 562 626 IPR002004 GO:0003723
Vvi3g0432 648 MobiDBLite consensus disorder prediction 1 21 - -
Vvi3g0432 648 SMART rrm1_1 313 385 IPR000504 GO:0003723
Vvi3g0432 648 SMART rrm1_1 210 282 IPR000504 GO:0003723
Vvi3g0432 648 SMART rrm1_1 31 104 IPR000504 GO:0003723
Vvi3g0432 648 SMART rrm1_1 119 191 IPR000504 GO:0003723
Vvi3g0432 648 Gene3D - 550 633 - -
Vvi3g0432 648 Gene3D - 24 118 IPR012677 -
Vvi3g0432 648 CDD RRM3_I_PABPs 208 287 - -
Vvi3g0432 648 Gene3D - 119 191 IPR012677 -
Vvi3g0432 648 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 554 631 IPR002004 GO:0003723
Vvi3g0432 648 Gene3D - 194 295 IPR012677 -
Vvi3g0432 648 Gene3D - 296 402 IPR012677 -
Vvi3g0432 648 FunFam Polyadenylate-binding protein 550 632 - -
Vvi3g0432 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Vvi3g0432 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 187 IPR000504 GO:0003723
Vvi3g0432 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Vvi3g0432 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0432 Vvi-Chr3 3610491 3625980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0432 3 647 Eukaryotic Initiation Factors Gene Family AT4G34110 68.654 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0432 K13126 - vvi:100241923 1183.7