Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0426 ATGGGTAGAAACACAATTTCTTTCTGTTCCATTTTTCTCATTTGGGCATTGTTTCTTGATTGGGGTTTGTTGCGGCGATATGTAGCTGCGGATGATGGTGGGGTGGTGAAAAGGGAAGGGTTTGAGATTATAATTGGCGGTGGCTATAGTCCACCTCCTGAGTATGAAGAAGGCTGTCCACCTCCCCCTCCTGAGCCTGAATGCCCCCCACCTCCACCTCCATCTCCACCTCCACCTCCACCTCCATCTCCACCTCCACCTCCATCTCCACCTCCACCTCCACCTCCATCTCCACCTCCACCTCCATCTCCACCTCCACCTCCACCTCCATCTCCACCTCCACCCCCTCCTCCACCCCCTCCTCCTCCTCCTCCTCCACCTCCTCCTCCTCCTCCGCCTCCGCCTCCTCCTCCTCCACCAGTCGATCGCAATGCGAGACTTAAAATTGCTCTAAAAGCAATCAGGATATTCCAAGCCAAAATCACGGTAGATCCTTTTAATATCGCCAAGGGATGGAAGGGCAACAATCCTTGCAAATTCAAGGGCTTCGTCTGCAGTACTGTCCCGGACAAGAACCTGAACGCAGTCGCCGGAGTAGACTTCAATGGCTTTAACTTCGGAGGCCCCAACCTCGCTCTTGACGGCTTCCTTAACGGGTTACCAGACATAACCATCTTCCACGCCAATTCCAACGACTTCAACGGTCGCATCCCCAAAATTGACACTACAAAACTCCGATACCTTTACGAGCTGGACTTGAGCAACAACAAGCTACATGGTGAGTTCCCATACGAAGTCCTCGCCGCCAAGCAGCTCACCTTCCTGGACCTCCGGTTCAACTCATTCTCTGGCGTGGTTCCGCCGCACGTCTTCATACTAGATGTGGACGTTATTTTCATAAATGACAACAATTTCATACAGCAGCTCCCGGAAAATATAGGGGACACGCCAGCCCTTTACCTCACTTTTGCCAATAACAAGTTTACAGGCCCCATCCCACGCAGCATCGGCCGATCCAAAAACCTTCTCGAGGTCCTTTTCCTCAACAACCAGCTGTCAGGGTGCTTGCCCTACGAGATAGGATATTTGAAAGACGCCACAGTGTTTGACGTTGGTTTCAACCAGTTAACTGGCCCAATCCCGCATTCATTCGGCTGCTTGGACAGCATTCAGATCCTTAACTTGGCCGCAAACCAGTTCTACGGGCCTGTCCCTGAAACTCTCTGCGAGCTGCCCAACCTCTACAACCTGTCTCTCTCACACAACTATTTCACTCAGGTTGGCCCCAAATGCCGAAAATTGATAACGGAGAAGAAACTGGACGTGAGGATGAACTGCATTTTGGGACTTCCACAGCAGAAACCAGAGCATGCCTGTTCTCATTTCTTCTCCCAAGTCAGGCAATGCCCTGATCCCAAGTCATTTATCAAAGTCCCTTGCGGTAGGTACCCAAGCCATCTTCCTTCATCCTCCAAGCCCCCCGCTCTGCGAACCTATGGTACCCTCATCCCACATCGACTGTGA 1524 0.5184 MGRNTISFCSIFLIWALFLDWGLLRRYVAADDGGVVKREGFEIIIGGGYSPPPEYEEGCPPPPPEPECPPPPPPSPPPPPPPSPPPPPSPPPPPPPSPPPPPSPPPPPPPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPVDRNARLKIALKAIRIFQAKITVDPFNIAKGWKGNNPCKFKGFVCSTVPDKNLNAVAGVDFNGFNFGGPNLALDGFLNGLPDITIFHANSNDFNGRIPKIDTTKLRYLYELDLSNNKLHGEFPYEVLAAKQLTFLDLRFNSFSGVVPPHVFILDVDVIFINDNNFIQQLPENIGDTPALYLTFANNKFTGPIPRSIGRSKNLLEVLFLNNQLSGCLPYEIGYLKDATVFDVGFNQLTGPIPHSFGCLDSIQILNLAANQFYGPVPETLCELPNLYNLSLSHNYFTQVGPKCRKLITEKKLDVRMNCILGLPQQKPEHACSHFFSQVRQCPDPKSFIKVPCGRYPSHLPSSSKPPALRTYGTLIPHRL* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0426 507 SUPERFAMILY L domain-like 161 449 - -
Vvi3g0426 507 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 333 427 - -
Vvi3g0426 507 PRINTS Proline rich extensin signature 66 82 - -
Vvi3g0426 507 PRINTS Proline rich extensin signature 98 119 - -
Vvi3g0426 507 PRINTS Proline rich extensin signature 51 63 - -
Vvi3g0426 507 PRINTS Proline rich extensin signature 86 98 - -
Vvi3g0426 507 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 139 492 - -
Vvi3g0426 507 MobiDBLite consensus disorder prediction 46 122 - -
Vvi3g0426 507 SUPERFAMILY beta-sandwich domain of Sec23/24 69 140 - -
Vvi3g0426 507 MobiDBLite consensus disorder prediction 54 122 - -
Vvi3g0426 507 Gene3D Ribonuclease Inhibitor 176 459 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0426 Vvi-Chr3 3554409 3555932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0426 144 473 Trihelix Transcription Factor Family AT4G33970 42.262 1.84e-84 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0426 - - vvi:100241832 773.852