Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0425 ATGATGAACATGGCGTCGCCGGAGATGCTGCACTGCCTAAGTACGTCAGGGAATGTTGCCGGAAACGGTACCGACATGACTGTTTTCGAGAGGCAGAGAGTCCGGATGAAGTGGCAGCAAGAGCAGTTTCAGCAGCAGCAGCAGCAGCAACAGCAGAGCTATTTTGGTGGAAATGAGTTTAGTATGTTTTCCATGGGTGGTCAGGTTGGACAAGCTCAGCAGTTTCATGGGTTGATCAACGGTGACTCAGCGGGCGTCGGGGACTTGTTGGGCCGGGCGGTGAAGGCGGACCCCGGTTTGGAAAATGTGTGGCCGGAGTTTGGGAAATTGACGATGCCCGGAACCGGATTTAATGTGGAGAACGCAGGATTTGAGTCTGCAGGAATACTGAATTGCTCGGGGTTTGAGATGAATCATACTACTTCGAGAACCTCCAGTTGCCCACTAGCGGCGGCGGAGGCTAAAGTTCGGGAGTCTGTTTTGCCAGAGAAGATAGCTTCGGCGGTCGGAAGAGAGAGCTTCAAGAAGAGAAAGGCTGATAAGGTGCAGAGCCCAAAGGTTGTTGCAGAAGAGGAAACCAAAGATAAGAGGATTAAGGGATGTGCAGAGGATGGGGAGTCCAAGATCACTGAGGCAAACAATAACAAAAACAGCACCACCACCACTACAACCACCGCAACCACCACCACCACCAACAACAACAATAGAGAAACATCAGCAGATACTTCAAAGGTTTCAGAAGTTCAAAAACCCGACTACATTCATGTTCGAGCACGGCGAGGCCAGGCCACTGACAGCCACAGCCTGGCCGAAAGAGTGAGAAGGGAGAAAATCAGCGAGAGAATGAAATATCTGCAAGATTTAGTTCCGGGATGCAACAAGATCACAGGGAAGGCCGGAATGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGTTTCTATCCATGAAACTAGCAGCTGTGAATCCCAGACTTGACTTCAACATCGACAACTTCCTAGCAAAAGAGGTGTTTCCTGCTTGTGCAGCCAATTTTCCAACCATCGGAATGTCATCAGAAATGACTAACCCTTCATATCTTCACTATGATCCAATACAACAAGTGGCTACATGTGGGGTGGAAATGGGAATAAATCCCGCAGAAATCGCGCTCCGCAGAACCATAAGCGCCCCAGTATCAATCCCTGATACTTTTCTGGACTCCTGCTTCACTCAAATCCAGCCCTCTTCAACCTGGGATGCTGATTTACAAAACCTTTACGGCCCAGAATTTCATCAAGGAAGATTAATGTCCTTCCCATCTCAGGCAGCATTTACAGGTCCCATTGATGCTAGCAATCTAAAGATGGAGATGTGA 1371 0.485 MMNMASPEMLHCLSTSGNVAGNGTDMTVFERQRVRMKWQQEQFQQQQQQQQQSYFGGNEFSMFSMGGQVGQAQQFHGLINGDSAGVGDLLGRAVKADPGLENVWPEFGKLTMPGTGFNVENAGFESAGILNCSGFEMNHTTSRTSSCPLAAAEAKVRESVLPEKIASAVGRESFKKRKADKVQSPKVVAEEETKDKRIKGCAEDGESKITEANNNKNSTTTTTTTATTTTTNNNNRETSADTSKVSEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDNFLAKEVFPACAANFPTIGMSSEMTNPSYLHYDPIQQVATCGVEMGINPAEIALRRTISAPVSIPDTFLDSCFTQIQPSSTWDADLQNLYGPEFHQGRLMSFPSQAAFTGPIDASNLKMEM* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0425 456 Pfam Helix-loop-helix DNA-binding domain 266 313 IPR011598 GO:0046983
Vvi3g0425 456 CDD bHLH_AtBPE_like 252 337 - -
Vvi3g0425 456 Gene3D - 259 332 IPR036638 GO:0046983
Vvi3g0425 456 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 166 358 IPR024097 GO:0006355
Vvi3g0425 456 SMART finulus 268 318 IPR011598 GO:0046983
Vvi3g0425 456 FunFam Basic helix-loop-helix transcription factor 259 331 - -
Vvi3g0425 456 MobiDBLite consensus disorder prediction 173 246 - -
Vvi3g0425 456 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 262 312 IPR011598 GO:0046983
Vvi3g0425 456 MobiDBLite consensus disorder prediction 173 210 - -
Vvi3g0425 456 MobiDBLite consensus disorder prediction 211 246 - -
Vvi3g0425 456 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 260 331 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0425 Vvi-Chr3 3488848 3491369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0425 117 426 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 44.868 1.88e-72 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi3g0425 HLH 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0425 - - vvi:100252098 870.537