Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0423 ATGGGTTTTGCTGTTGCGGCAATGAAGATGGTTCATCGTGGTTATATTGTTGTCCTTTTGGTTGAACTGCTTGTTTTCTGTTCTTTCATGGCTTCCTCCGCCACAAGCTCGAATGACATGTCTACTGCCATTCTCATAAGGGTTGACCAGTCTGGAAATGGAGATTATGGCAAGATTCAAGACGCCATTGATGCTGTTCCATCTAATAACTCACAGCTTTATTTCATCTTGGTCAAGCCAGGAACATACAGAGAAAAGATTGTTGTGCCTGCTGACAAGCCCTTCATAACATTGAGTGGCACACAGGCCTCTACTACCATAATAACATGGGGTGATGGAGGGGAGATATTTGAGTCTCCAACACTCTCCATATTGGCTTCTGATTTTGTTGGAAGATATCTCACAATTCAGAATACATTTGGGACAAGCAGCAAAGCTGTTGCAGTAAGGGTATCGGGCGACAGAGCTGCATTCTACAACTGCAGGATCCTGTCTTATCAGGACACTCTCCTGGATGATGCTGGAAGACATTACTACAGAAACTGCTACATTGAAGGAGCCACTGATTTCATCTGTGGAAGTGCTGCTTCTCTCTTTGAAAAGTGTCACCTGCATTCACTCTCTGAAGGAAATGGAGCCATCACTGCCCAACAAAGAGGGTCTACTTCAGAGAACAATGGCTTTACCTTCTTGGGCTGCAAGATCACAGGCGTTGGAACTCCTTACCTTGGAAGGCCATGGGGTCCTTACTCTAGGGTGGTGTTTGTTCTATCCTTCATGTCCAGTGTGGTACAGCCACAGGGATGGGATGACTGGGGAGACTCCAACAAGCAAAGCACAGTATACTATGGCGAATACAAGTGTTATGGTCCTGGTGCCAATAGAACGGAAAGAGTTGAATGGTCGCGGAGCCTATCAAGCGATGAAGCCGTACCCTTCCTGACGAAGGAGATGATAGGAGGGCAGGGCTGGCTTAGACCTGCACCAACCTACTTCATGAGAGGCTCTAGTGTTATCACCATGAATACTGATGGAAAAAACTAG 1044 0.4626 MGFAVAAMKMVHRGYIVVLLVELLVFCSFMASSATSSNDMSTAILIRVDQSGNGDYGKIQDAIDAVPSNNSQLYFILVKPGTYREKIVVPADKPFITLSGTQASTTIITWGDGGEIFESPTLSILASDFVGRYLTIQNTFGTSSKAVAVRVSGDRAAFYNCRILSYQDTLLDDAGRHYYRNCYIEGATDFICGSAASLFEKCHLHSLSEGNGAITAQQRGSTSENNGFTFLGCKITGVGTPYLGRPWGPYSRVVFVLSFMSSVVQPQGWDDWGDSNKQSTVYYGEYKCYGPGANRTERVEWSRSLSSDEAVPFLTKEMIGGQGWLRPAPTYFMRGSSVITMNTDGKN* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0423 347 SUPERFAMILY Pectin lyase-like 42 333 IPR011050 -
Vvi3g0423 347 Gene3D - 41 335 IPR012334 -
Vvi3g0423 347 FunFam Pectinesterase 40 329 - -
Vvi3g0423 347 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 34 326 - -
Vvi3g0423 347 Pfam Pectinesterase 48 321 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0423 Vvi-Chr3 3477198 3479245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0423 17 327 Carbohydrate Esterase AT5G47500 37.500 2.99e-83 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0423 K01051 - vvi:100246890 687.567