Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0421 ATGAATGATCTTATGACAAAATCGTTCCTCAGTTATGTTGAATTGAAGAAACAGGCCATGAAAGATCTCGAATCTGAGCCAGACATCGAGATGGGAAAACTCGACCCAACAGATGAACAAAACCTTACTAACTTCTTCGAAGAAGTGGGTGCAATCAAGACAGATATGGAAGAGATCGTCAATCTCCTTCTAGACCTACAAGATCTAAATGAAGAGTCAAAATCTACGCACAGTGCTAAAGTTCTTCGAGGGCTCAGAGACCGAATAAACTCAGACATGGTAACTATTCTTCGAAAGGCGAAAAATATCAAAGCAAGATTGGGATCCCTTGATCAATCCAATATCGATAATCGCAGTATATCAGCTGCTTACAAGGAAGGAAGCCCAATTGATAGAACCAGAATGTCAGTGACAAATGGGTTGAGAATTAAGCTAAGAGACATGATGAATGATTTTCAGTCCTTGAGAGACCAGATTGTGAAAGACCACAAAGAATGTCTCAAGAGGAGGTACTTCAATGCCACTGGAGAGGAACCCAGTGAGGAAGTCGTAGAGAAGATGATTTTGGGAGGTGGGCAAGTGAATGTTTTTGATGGGAAGGCAGATTTGGTAATGGAGAATCAGGAGAGGCATGAGGCTCTGAAGGAGATACAGAGAAGCTTGACAGAGCTCCATCAAGTTTTTCTGGACATGGCTGTTTTGGTTGAGAGACAAGGGGAAGAGGTCAATGATATCGAGCAGAATGTGGCTCAGGCTGGAGATTACATCAGTGAGGGGACAAAGAAGCTTGATTCTGCTAAGCAGTTAAAGAAAAGGTCGATGAAATGGACTTATTGTCTTGGAGCTCTCATCTTTGTCTTGATATTGATATGCCTGATTTTGACTTTCTTGAAGAATTGA 900 0.4167 MNDLMTKSFLSYVELKKQAMKDLESEPDIEMGKLDPTDEQNLTNFFEEVGAIKTDMEEIVNLLLDLQDLNEESKSTHSAKVLRGLRDRINSDMVTILRKAKNIKARLGSLDQSNIDNRSISAAYKEGSPIDRTRMSVTNGLRIKLRDMMNDFQSLRDQIVKDHKECLKRRYFNATGEEPSEEVVEKMILGGGQVNVFDGKADLVMENQERHEALKEIQRSLTELHQVFLDMAVLVERQGEEVNDIEQNVAQAGDYISEGTKKLDSAKQLKKRSMKWTYCLGALIFVLILICLILTFLKN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0421 299 Gene3D - 37 167 - -
Vvi3g0421 299 PANTHER SYNTAXIN 39 288 IPR045242 -
Vvi3g0421 299 Pfam SNARE domain 242 290 IPR000727 -
Vvi3g0421 299 SMART tSNARE_6 199 266 IPR000727 -
Vvi3g0421 299 CDD SNARE_syntaxin1-like 208 263 - -
Vvi3g0421 299 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 170 - -
Vvi3g0421 299 SMART SynN_4 37 164 IPR006011 GO:0016020
Vvi3g0421 299 Coils Coil 52 72 - -
Vvi3g0421 299 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi3g0421 299 FunFam Syntaxin 132 199 298 - -
Vvi3g0421 299 Gene3D - 200 297 - -
Vvi3g0421 299 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Vvi3g0421 299 CDD SynN 45 194 IPR006011 GO:0016020
Vvi3g0421 299 SUPERFAMILY t-snare proteins 41 259 IPR010989 GO:0016020|GO:0016192
Vvi3g0421 299 Pfam Syntaxin 44 239 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0421 Vvi-Chr3 3462578 3463477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0421 1 293 SNARE and Associated Proteins AT2G18260 54.636 1.26e-113 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0421 K08486 - vvi:100262324 561.222