Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0404 ATGGCTCCGAAGAAAGAGAAGGCTCCTCCACCCTCGTCCAAGCCCGCCAAGTCCGGCGGTGGCAAACAGAAGAAGAAGAAGTGGAGTAAGGGGAAGCAGAAGGAGAAGGTGAACAACATGGTGCTATTTGACCAGGCTGCCTATGACAAGCTTCTTTCTGAAGCTCCCAAATACAAACTCATCACCCCTTCCATTCTCTCTGATCGTTTGAGGATCAATGGCTCACTGGCAAGGAGGGCAATTAAAGAACTGATGGCTAGAGGTTTGATCAGGATGGTGTCTTCCCATTCAAGTCAGCAGATATACACAAGGGCTACAAACGCTCCACCCTAG 333 0.4985 MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQAAYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKELMARGLIRMVSSHSSQQIYTRATNAPP* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0404 110 Gene3D - 21 109 - -
Vvi3g0404 110 Pfam S25 ribosomal protein 7 105 IPR004977 -
Vvi3g0404 110 MobiDBLite consensus disorder prediction 1 36 - -
Vvi3g0404 110 FunFam 40S ribosomal protein S25 21 109 - -
Vvi3g0404 110 PANTHER 40S RIBOSOMAL PROTEIN S25 1 107 IPR004977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0404 Vvi-Chr3 3343780 3347138 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0404 1 107 Cytoplasmic Ribosomal Protein Gene Family AT4G34555 91.589 7.35e-54 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0404 K02975 - vvi:100258834 166.007