Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0399 ATGGATCGCAAAAACTTCCAAATGCCCTCCACCAAAACCATGATCTCGGCCGCAGCCTCCCTTGCTGGTTCAGCCATGTTGATTCGCTCGATCATCCGAGACCTCATCCCCCCAGAGCTCCAACACTACCTCTTCTCCAGATTTCGAGGCCTTTTAGGCTCATTCACCTCCGAATTTACCTTGGTAATCGAGGAATTTGATGGGTTTGGACACAACCAACTCTTCCGAGCTGCAGAGGTCTACCTGGGATCTGTCATCTCCCCAAATGCTCAAAGGCTTCGAGTCACATTGCCCAACAAGGAAAGCAAGATGTCGGTAACCATGGACCGGAATGAAGATGTGGCCGATACCTTCAATGGGGTTTCCTTGAAATGGACATTCATTTCAAGGAGCATTCCAACCAGGTACTTCAATGATCCAGACAATTATTACTCCATGGCCAAGTCAGAGCTCAAGTTCTTTCAATTGAGCTTTCACAAGAAGCACAAGCAAACGGTGCTTGAGGCTTACTTGCCATATGTACTGGAGAAATACAAAGCCATGAAAGAAACAAACAAGACCCTGAAAATCCACACTCTCAAGTTTGAGAGGTTGCAGGGAGGGAGCAGCGATCCATGGCAGTCGGTGAAGCTTGATCATCCGGCTACTTTTGATACACTGGCGATGGACTCGGAGCTCAAGAGGACTTTAATGAATGATCTTGAGAGGTTTGTGAGGAGGAAAGGGTTTTACAGGAAAGTTGGCAAGGCCTGGAAGAGGGGGTACTTGCTGTTTGGGCCTCCTGGTACTGGGAAATCGAGCTTGATTGCAGCCATGGCTAATTATTTGAATTTTGATATCTATGACTTGGAGCTCACAGATCTTAGATGCAATTCTGAGCTCAGGAAATTGCTGATTTCTACTGCAAACCGATCCATACTTGTGGTGGAGGATATTGATTGCTCCCTTGAATTGCAAGATAGACTAGCTCAAGCCAGAATGATGAATCCTCATCGATACCAAACAAGCCAGGTGACTCTATCAGGGCTGCTCAATTTCATAGATGGGCTGTGGTCAAGCTGTGGAGATGAGCGGATCATAGTCTTCACAACCAACCACAAAGACAAGCTTGACCCAGCTCTGTTGCGCCCTGGTCGCATGGATATGCATATCAACATGTCTTACTGCACCCCATGTGGGTTCAAAATGCTAGCCTCCAACTACCTTGAGATCACAAACCACCCTCTTTTCCCAGAGGTTGAAGACTTGATCTTGGAAGCAAAGGTAACCCCTGCAGAAGTGGGTGAGCAACTGATGAAGAGTGAGGAGCCTGATATCACCCTAGAAGGCCTAATTCGGTTCCTTGTGGAGAAGAAAGAAAGTGACGCAGCTAAAGCTAGAGAGGCAGAGCTGGAAGCAGCCAGGGCTAGTGATAAGGAGGAAAAGGAGAAAGATGAGAATGGGAAACCAGAGAAGGGGGGAGAGGTGGAAATAAAAATGATCCGGTGA 1488 0.4738 MDRKNFQMPSTKTMISAAASLAGSAMLIRSIIRDLIPPELQHYLFSRFRGLLGSFTSEFTLVIEEFDGFGHNQLFRAAEVYLGSVISPNAQRLRVTLPNKESKMSVTMDRNEDVADTFNGVSLKWTFISRSIPTRYFNDPDNYYSMAKSELKFFQLSFHKKHKQTVLEAYLPYVLEKYKAMKETNKTLKIHTLKFERLQGGSSDPWQSVKLDHPATFDTLAMDSELKRTLMNDLERFVRRKGFYRKVGKAWKRGYLLFGPPGTGKSSLIAAMANYLNFDIYDLELTDLRCNSELRKLLISTANRSILVVEDIDCSLELQDRLAQARMMNPHRYQTSQVTLSGLLNFIDGLWSSCGDERIIVFTTNHKDKLDPALLRPGRMDMHINMSYCTPCGFKMLASNYLEITNHPLFPEVEDLILEAKVTPAEVGEQLMKSEEPDITLEGLIRFLVEKKESDAAKAREAELEAARASDKEEKEKDENGKPEKGGEVEIKMIR* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0399 495 Coils Coil 459 479 - -
Vvi3g0399 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 433 IPR027417 -
Vvi3g0399 495 Pfam ATPase family associated with various cellular activities (AAA) 256 387 IPR003959 GO:0005524|GO:0016887
Vvi3g0399 495 CDD RecA-like_BCS1 230 386 - -
Vvi3g0399 495 MobiDBLite consensus disorder prediction 458 495 - -
Vvi3g0399 495 ProSitePatterns AAA-protein family signature. 358 376 IPR003960 GO:0005524|GO:0016887
Vvi3g0399 495 Gene3D - 385 454 - -
Vvi3g0399 495 SMART AAA_5 251 390 IPR003593 GO:0016887
Vvi3g0399 495 PANTHER BCS1 AAA-TYPE ATPASE 16 455 - -
Vvi3g0399 495 Pfam Domain associated at C-terminal with AAA 36 128 IPR025753 -
Vvi3g0399 495 Gene3D - 206 384 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0399 Vvi-Chr3 3303339 3305826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0399 253 386 Calmodulin-binding Proteins AT3G56690 30.282 8.59e-11 62.8