Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0394 ATGGGTTTTGATTTGGATCCCCTCGACGATGTGCTTCCTGAGCCTGCTGCTATCAATGCTCGGGCTGGGGGCAAGTTTCAACCAAAGGCAAAAGCCCGACCTAGAAAGGGAACATCTGCCTCAGTTCCATCAACTATTTCTAATGCTACAAAGGAAAAGACAATTAGGCCGACCACTACTGGCTCAGACACAACACAGTCTCTTCGCCCTATCGATGTTATACAGAATGGATTAAATGACACAGTTGGTTCATCTCTAGATACCTCAGAGATTGGTGGGAGTAAAGATACTTTGAAAGACCATGAGGGTTTGGTTGGAGGAGTTTCATTCACTGATAACAATAGAAGTCTGGCATCGGTGAGTTCCCTGTCCCAAGTTTTTGCCTCTGGAGAGGATGTGGGCACCACAGGTGCTCCCCCTTCAGAGACAGGTGCTCCACATCCAGGAGCCATATCTGATGGCAATGGTGATTGGCATTCTAGCTTTGGGAAAAAATTGAAAAATTACGAGGGTTCTCCTTCAGAACTTCAATTTCCTCGTGAAAGCAGAAGCTCATTTCTAGTGAACCCCTCATCTCAACTTCTTGTGGAGGATTTGGGCTCCACAGATGCTCTGCATTCGGAGGTTGCTGCTTCTGATGGCAATGGTGATTGGGTCTCTAGTTTTGGAAAATCAGTGGGAGAGGCAGACACTCTGGGGTTTGATTTGGACCCATTTGATGACATTCTTCCTGGGCCTGCCACAAGCAATGTTAGGGGTAGTGGCAAGTTTCAACCCAAGGCCAAGTCTCAACCAAGGAAGGAAACATCTGCATCAGTCACTACCACTCTCCCTGATGTCACAAAGGAAAAACCAGTTACACTAGCCTCCATTGGCATAGATGCAGCACAGTCTGTTCAGCCGGCTAATGTTGTAGGTAATAGATTGACGGATTCAGTTGGTCCTTCTTCAACTACTTCTGGGATGCTTGGGGCTAAGGAGCCATTGATAGAACATGTGGGTTCATTTTCAGGGGTTACATTCTGTGATGATGATAGAAGCTCTGTAATGGTAAACCCCTCAGGTCCACTTGATGCAATAGATGCTCTGCATTCAGAAGTTGCAATTTCTGATGGCAATGGTGATTGGAATTCTAGCTATGGAAAATCAACAGGAGAGAATGCAGACATATTTTCTGGGTTGGAATATCTTGATGATTTTCTCTCTCAGCCTGCCACTGTGACAGTGAGTGCTGCAAGTAAGCCCCAACCTCAGGTTAACATGAATGCCCTCCCAGGGAACAAGTTCCTGGAATCATATCCTGTTTATACTGATGCTGAAGGTCGGCTCTCTCCTTCAGAGGCACAAAATCTTCCTGCTTCCAATAACAAGGACATAGGGGAGGAACCTGAAGATCAAGCGGGTGGGAGGCAAGCTGATGTCTGTAAAAATGATCAAGATTTTCAGATTGATAATAGAAGGTTGCAGCCAGAGGAAGTAGAGGCCTTTTCTGGCTTGGAAACTCTAGATATTTTGTCAAAGGCCACCCTTGCATCTGGGCAACATATGGGAGAAAACCCATCCCAATCCAAGCTACATACTGACAAAGATAAACCTAGCTTTGATGTGCCCCATCCAGACACAGTTGAGTCCGTTTCATGTTCACAGGATGCTCATTTGCTTCCATCTGAAACTGAATACATGGATGAGGACTCGATTCCTGCTTTCCCAGCTGGTGAAGTTCTTGATTTCTCATCTGTGAGGTTCAGTGACTCTGCTTCTACAGATCCTACCTATGAATTACCAGTGAACAATAAAGACCTTGCAAAGAGTGCCAACTTAGATGCTGCTGCTTCTGGAGATGTGCATTCAGCAGGGGCTGGTCCTAAAATTCCTGGAAGTGAGAGTTCAAAGGGCAGAAAAAGAAAAACTTCGACAGGATCTGTTCTCTCTCAAAAGGGCCAAAAATCTTCCACAGCTGTTGACAAGAATGAAACTGGGAAATCATCAAGGCGGCTGAGAAAACGGATACTTACACATGAACTTGTTGATGAGTCTGAGGATGAGGCTCGTGATAATGGGGCCAAGCCTGCTGAACCTCCTATTAATTCTGTTGCTGATGAGGATAGAAATAGGGATGATGAGTGCAAGGTGAAAAATTTATCCCGAAAGAAAAGAGCTCCAAGAAAGTCAATGAAATCTGTTGCTGAAAATGAAAAGCCAGTTCGGAAGCGTAAGAATGCCAATGAAACAGGGGACAAGTCAACCAAAGAACCTCCCAAGAAATTTTCACATTCTACCAGGAGGAAAAGAAGATGTGTGGACAAGACTTTGCTTGAAACACCGGAGGATGAAATTGACCCTCAAAAGTTGCCCATTAGGGATCTAATTGTTCTGTCAGAGATGAGAGAGCGGATGAATAAAGAGGCCTCATCATCGAAAGTACCATTGGCCAATCAAAGTGCTGATGATTCTTATCTGCATGATTCTTTTGATAATGGATGGGAAACTGGTGCTACAGAACAGGCTAGGGCATCAAATGATGATGAAGAAAATGTTAGGATTCAATCAAGTAGTCATTACATTAATTACCAGTCTTACATGGACAAAACACCCACTTCAAGATGGTCAAAAAGTGACACAGAGTTGTTCTACGAGGCTGTTCAGCAGTTTGGGACAGATTTTTCTATGATAATGCAACTTTTCCCTGGTCGAACACGTAATCAAGTCAAGTTGAAGTATAAGATGGAAGAGCGTAAACATCCACTGAGGCTTTTTGAAGCTTCGACAAATCGTGCCAAAGATCATTCCCATTTTGAACTAGTAATTGAGCAGCTGAAACAAGTTGCTGCTCAGGAAGAACAGAACTCAAAGCAGGAGAACTCAGTTGGTTTGACAGGTGTGGAGGAGGAGATGGAAGAGGTGACTCTTGAAACTAATGAAGGTGCAACAAAGTCTGGCCAAAATGAAGAAGGTGCCGTTGAAGAAGCTTTAGCTGAAGACAAGGAAACAGACGTTGCTGAATTTGGTCCTGAGAAGTCTGATGAAAGTGATGATGACCTGTATAGATGGAGTCAATATAAAAGTGAATTATAA 3075 0.441 MGFDLDPLDDVLPEPAAINARAGGKFQPKAKARPRKGTSASVPSTISNATKEKTIRPTTTGSDTTQSLRPIDVIQNGLNDTVGSSLDTSEIGGSKDTLKDHEGLVGGVSFTDNNRSLASVSSLSQVFASGEDVGTTGAPPSETGAPHPGAISDGNGDWHSSFGKKLKNYEGSPSELQFPRESRSSFLVNPSSQLLVEDLGSTDALHSEVAASDGNGDWVSSFGKSVGEADTLGFDLDPFDDILPGPATSNVRGSGKFQPKAKSQPRKETSASVTTTLPDVTKEKPVTLASIGIDAAQSVQPANVVGNRLTDSVGPSSTTSGMLGAKEPLIEHVGSFSGVTFCDDDRSSVMVNPSGPLDAIDALHSEVAISDGNGDWNSSYGKSTGENADIFSGLEYLDDFLSQPATVTVSAASKPQPQVNMNALPGNKFLESYPVYTDAEGRLSPSEAQNLPASNNKDIGEEPEDQAGGRQADVCKNDQDFQIDNRRLQPEEVEAFSGLETLDILSKATLASGQHMGENPSQSKLHTDKDKPSFDVPHPDTVESVSCSQDAHLLPSETEYMDEDSIPAFPAGEVLDFSSVRFSDSASTDPTYELPVNNKDLAKSANLDAAASGDVHSAGAGPKIPGSESSKGRKRKTSTGSVLSQKGQKSSTAVDKNETGKSSRRLRKRILTHELVDESEDEARDNGAKPAEPPINSVADEDRNRDDECKVKNLSRKKRAPRKSMKSVAENEKPVRKRKNANETGDKSTKEPPKKFSHSTRRKRRCVDKTLLETPEDEIDPQKLPIRDLIVLSEMRERMNKEASSSKVPLANQSADDSYLHDSFDNGWETGATEQARASNDDEENVRIQSSSHYINYQSYMDKTPTSRWSKSDTELFYEAVQQFGTDFSMIMQLFPGRTRNQVKLKYKMEERKHPLRLFEASTNRAKDHSHFELVIEQLKQVAAQEEQNSKQENSVGLTGVEEEMEEVTLETNEGATKSGQNEEGAVEEALAEDKETDVAEFGPEKSDESDDDLYRWSQYKSEL* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0394 1024 MobiDBLite consensus disorder prediction 636 657 - -
Vvi3g0394 1024 MobiDBLite consensus disorder prediction 513 567 - -
Vvi3g0394 1024 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 21 1024 - -
Vvi3g0394 1024 MobiDBLite consensus disorder prediction 992 1024 - -
Vvi3g0394 1024 MobiDBLite consensus disorder prediction 696 714 - -
Vvi3g0394 1024 MobiDBLite consensus disorder prediction 38 92 - -
Vvi3g0394 1024 MobiDBLite consensus disorder prediction 522 537 - -
Vvi3g0394 1024 MobiDBLite consensus disorder prediction 658 688 - -
Vvi3g0394 1024 MobiDBLite consensus disorder prediction 130 184 - -
Vvi3g0394 1024 CDD SANT 868 909 IPR001005 -
Vvi3g0394 1024 Pfam Myb DNA-binding like 859 943 IPR039467 -
Vvi3g0394 1024 MobiDBLite consensus disorder prediction 441 472 - -
Vvi3g0394 1024 FunFam Predicted protein 869 949 - -
Vvi3g0394 1024 Coils Coil 936 956 - -
Vvi3g0394 1024 SMART sant 865 913 IPR001005 -
Vvi3g0394 1024 MobiDBLite consensus disorder prediction 243 276 - -
Vvi3g0394 1024 MobiDBLite consensus disorder prediction 945 1024 - -
Vvi3g0394 1024 Gene3D - 869 955 - -
Vvi3g0394 1024 MobiDBLite consensus disorder prediction 724 755 - -
Vvi3g0394 1024 MobiDBLite consensus disorder prediction 19 101 - -
Vvi3g0394 1024 MobiDBLite consensus disorder prediction 458 472 - -
Vvi3g0394 1024 MobiDBLite consensus disorder prediction 605 769 - -
Vvi3g0394 1024 SUPERFAMILY Homeodomain-like 867 916 IPR009057 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi3g0394 Myb_DNA-bind_7 1.4e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0394 K15198 - vvi:100854024 1938.7