Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0393 ATGGCTTCCTCCAGTGGCACATCTTCAGGGTCAACTTTGCTTCAGAACTCTGGTTCTGAAGAAGATTTGCAGGCTTTGATGGATCAGAGAAAGCGGAAAAGAATGATATCCAATAGAGAATCTGCAAGAAGGTCAAGGATGAGGAAGCAGAAGCACTTGGATGATCTAATGGCTCAGGCTGCTCAGCTGAGGAAGGAGAACAGCCAGATTATCACAAGCATGAATGTCACCACCCAGCATTACTTTAACATTGAGGCTGAAAATTCAGTACTCAGAGCTCAATTCTCTGAGCTCAGCAACAGACTGCAGTATCTGGTTGAGATCATAAGTTTCTTGAATACAAGCAATGGTGGCTTTGAAAGTGGGGAGCCCTGGACCCTTCCTGAGCCTACCACTCCTGACAGCCTCATGAACCCTTTGAGTTTGCTATATTTGAGTCAACCCATCATGGCTTCTGATATCTTTCAGTACTGA 474 0.4515 MASSSGTSSGSTLLQNSGSEEDLQALMDQRKRKRMISNRESARRSRMRKQKHLDDLMAQAAQLRKENSQIITSMNVTTQHYFNIEAENSVLRAQFSELSNRLQYLVEIISFLNTSNGGFESGEPWTLPEPTTPDSLMNPLSLLYLSQPIMASDIFQY* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0393 157 MobiDBLite consensus disorder prediction 1 49 - -
Vvi3g0393 157 FunFam BZIP transcription factor 28 79 - -
Vvi3g0393 157 PANTHER BZIP TRANSCRIPTION FACTOR 44 4 152 - -
Vvi3g0393 157 MobiDBLite consensus disorder prediction 24 49 - -
Vvi3g0393 157 Coils Coil 46 73 - -
Vvi3g0393 157 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 28 91 IPR004827 GO:0003700|GO:0006355
Vvi3g0393 157 Gene3D - 28 81 - -
Vvi3g0393 157 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 33 48 IPR004827 GO:0003700|GO:0006355
Vvi3g0393 157 CDD bZIP_plant_GBF1 31 81 IPR045314 GO:0003700|GO:0006355
Vvi3g0393 157 MobiDBLite consensus disorder prediction 1 23 - -
Vvi3g0393 157 SMART brlzneu 26 90 IPR004827 GO:0003700|GO:0006355
Vvi3g0393 157 SUPERFAMILY Leucine zipper domain 30 83 IPR046347 GO:0003700|GO:0006355
Vvi3g0393 157 Pfam bZIP transcription factor 30 78 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0393 Vvi-Chr3 3227639 3228112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0393 24 157 bZIP Transcription Factor Family AT4G34590 54.225 8.78e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi3g0393 bZIP_1 1.6e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0393 K25786 - vvi:100257329 295.434