Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0379 ATGAGAATACATGTTCAAGAGAATAATGAGCGGTCTTTAAGATTGATTTTGAAAAAGGTTAAAAGATCTAAAAGTCACATACATGAACATTGCTATACCAAAGATGGAAAACCAACTGATGACCACTCAGATGGGCTTAGATTTTCTGAAAATGATTCAAGTGTAACTGTGATCCACGCTCATCCAAGGCACGGCAGGCAAATGAAACCCCATCAAGTGGAGGGCTTCAATTTTCTAGTAAGCAACTTGGTAGCAGATGATCCAGGGGGTTGCATTCTGGCTAATGCTCCAGGATCTGGGAAAACTTTCATGATCATTAGTTTCATGCAAAGTTTCCTGACCAAACATCCTGAAGTCAGATCTCTTGTTGTACTTCCCAAGAGTATTTTGGCAACATGGAAGAAAGAGTTTCTGACTTGGCAAGTTGAGGATATTCCACTGTATGACTTCTACTCAGTAAAGGCAGATAGGCCGTCTCAGCAGCTAGATGTGTTGAAACAGTGGGTGGTGGAGAAGAGCATCCTGTTTTTAGGACATACACAGTTCACTGCAATTGTTTCTGGTGATGGAGCTTCTGAGGCAGAACTTACCTGTCAAGAAGTACTGTTGAAGACCCGCAGATTCTTATTTTGGATGAAGATCACACTCCAAGGACCATCAAAATGA 666 0.4144 MRIHVQENNERSLRLILKKVKRSKSHIHEHCYTKDGKPTDDHSDGLRFSENDSSVTVIHAHPRHGRQMKPHQVEGFNFLVSNLVADDPGGCILANAPGSGKTFMIISFMQSFLTKHPEVRSLVVLPKSILATWKKEFLTWQVEDIPLYDFYSVKADRPSQQLDVLKQWVVEKSILFLGHTQFTAIVSGDGASEAELTCQEVLLKTRRFLFWMKITLQGPSK* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0379 221 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 23 207 IPR044567 GO:0080188
Vvi3g0379 221 Pfam SNF2-related domain 85 155 IPR000330 GO:0005524|GO:0140658
Vvi3g0379 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 157 IPR027417 -
Vvi3g0379 221 Gene3D - 37 196 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0379 Vvi-Chr3 3117366 3121748 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi3g0379 SNF2_N 1.6e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0379 K10875 - vvi:100243495 419.083