Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0376 ATGAGTTGCGGGTGTGCATATGCTTGTATTCGCTTCCCCAACTCATATCGCTGGATCAACAGACCGTATTCTTTCAAATACTTGTTGAATTATGGGAATAATGGCAACAAGATTGGAGGTTCCTGGAAAACAGGCCGGTTGGTTTCGAGGCCTTTGGCTAGAAATTTTGGGGGAGAACAAAAAGAAATGGGCAAAGACGAAGCCAGTAAAGATGATAAGAAGCTGAGGGGAATGACAAGTATGATTGAGGAAGGAAATTTGGCAATCCTGTCCTCCTGCTTTGTGGGTCTCCTCACTGGCATTGGTATTGTGCTCTTCAACAACGCGGTGCATGTAATTCGTGATTTTTCCTGGGATGGGATTCCCTACAGAGGTGCCTCATGGTTGAGAGAGGAGCCCATTGAAGCTATCTGGGAACGAGTAATTCTAGTACCATTATGTGGGGGTTTGCTTGTAAGTGGGTTAAATGTTCTTCGAGATGCTTTGCAGAGCCCTGGAGACGGAAACTTGATTTCTAATATAAAGGCTGCACTTCAACCATTCTTGAAGGCGGTGGCTGCTTGTGTCACCCTTGGTACTGGAAATTCATTGGGGCCTGAAGGTCCTAGCGTTGAGATAGGTGCATCCATCGCCAAGGGTGTTAGTTCTTTGTTTGATAAAAGCTCCAAAAGAAAGGTGTCTCTTGTTGCTGCAGGATCAGCTGCTGGAATCTCTTCTGGGTTCAATGCCGCTTTTGCTGGTTGTTTTTTTGCTGTTGAATCAGTCTTATGGCCCTCAACAGCAGATTCATCCCTATCACTCCAAAATACTACTTCTATGGTTATACTCAGTGCTGTAATAGCATCTGTAGTGTCAGAAGTTGGTCTTGGTTCTGAACCAGCCTTCAAGGTCCCAGAATATGATTTCCGTTCACCTGGTGAACTTCCACTGTATCTTTTGCTGGGTATCCTATGTGGGTTGGTTTCGTTGGCCTTATCTAAGTGCACATCTTACATGTTGGTAACTATTGACAATGTCCATAAGGCTGTTGGCATTCCAAGGGCTGCATTTCCTGTATTGGGTGGCCTATCTGTTGGGCTTATAGCCTTGGCTTATCCTGAAATTCTTTACTGGGGTTTTGAGAATGTTGACATATTGTTGGAATCTCGGCCATTTGTGAAAGGCCTCTCTGCTGATCTATTGCTTCAGCTAGTAGCTGTCAAGATAGTAGCAACTTCCTTGTGCCGGGCCTCTGGATTAGTAGGAGGCTACTATGCTCCATCTCTCTTTATTGGTGCAGCAACAGGAATGGCTTATGGAAAATTTATTACTTTTGCCATTTCCCAGTCCAATCCAATGTTTCATCTCTCCATTTTGGAAGTGGCGTCACCACAAGCATATGGCCTGGTTGGCATGGCTGCTACTCTTGCAGGAGTGTGTCAAGTGCCTCTCACAGCAGTTTTGCTTCTCTTTGAACTGACCCAGGACTATAGGATAGTTCTACCACTGCTGGGAGCTGTAGGGTTGTCTTCATGGACTACATCTAGGCAGGCTAAAAGAAAGGATGTTGGGGATCCTGGGAAACTTAAAGAGGGAAATGCTCAGAAAACAGATTTATCTTCCCATGACCCCAGTGTGCTCTCTTCTAGTTATTCAGTTGCTGCAAAGGCATCACATGCAAGTAACCTTTGTGAAGTTGAAAGTTCACTCTGTGTTGATGATTCCAATAGTGAGACAAAAGAGCTAGAAAAGAGGATTTTTGTTTCACAAGCCATGAGAACAAGATATGTGACTGTCCTGATGAGTACATTACTTATAGAGGCAGTGAGTCTACTGCTCGAGGAAAAGCAGACGTGTGCAGTAATCGTTGATGATGACCATCTCTTGATCGGTTTACTGACACTTGAAGACATTCAGGAGTTCAGCGAAAGAGAAAAAGCTAGAATCAGGAGATCCAAGGAGGTTTTAGTATCTGAAATGTGTTCTTTGGATGGTGAAAAATGCCGAGTGCCATGGACAGTAACACCAGGCATGAATCTCTTTTCTGCTCAAATGATCATGAACACACTTGGTGTGAATCAACTTCCAGTTATCTCAGATCATGTTGAAGATCACAAAGGGCATCCAGTTGGCCTCTTGGACAGGGAATGCATCAGCCTTGCTTTCAGGGCAGTAGCAGCCAGAGAATACCTGAGCTATGTTTCCACACCAGAAAAGGCATGA 2202 0.4455 MSCGCAYACIRFPNSYRWINRPYSFKYLLNYGNNGNKIGGSWKTGRLVSRPLARNFGGEQKEMGKDEASKDDKKLRGMTSMIEEGNLAILSSCFVGLLTGIGIVLFNNAVHVIRDFSWDGIPYRGASWLREEPIEAIWERVILVPLCGGLLVSGLNVLRDALQSPGDGNLISNIKAALQPFLKAVAACVTLGTGNSLGPEGPSVEIGASIAKGVSSLFDKSSKRKVSLVAAGSAAGISSGFNAAFAGCFFAVESVLWPSTADSSLSLQNTTSMVILSAVIASVVSEVGLGSEPAFKVPEYDFRSPGELPLYLLLGILCGLVSLALSKCTSYMLVTIDNVHKAVGIPRAAFPVLGGLSVGLIALAYPEILYWGFENVDILLESRPFVKGLSADLLLQLVAVKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFITFAISQSNPMFHLSILEVASPQAYGLVGMAATLAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGLSSWTTSRQAKRKDVGDPGKLKEGNAQKTDLSSHDPSVLSSSYSVAAKASHASNLCEVESSLCVDDSNSETKELEKRIFVSQAMRTRYVTVLMSTLLIEAVSLLLEEKQTCAVIVDDDHLLIGLLTLEDIQEFSEREKARIRRSKEVLVSEMCSLDGEKCRVPWTVTPGMNLFSAQMIMNTLGVNQLPVISDHVEDHKGHPVGLLDRECISLAFRAVAAREYLSYVSTPEKA* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0376 733 ProSiteProfiles CBS domain profile. 585 641 IPR000644 -
Vvi3g0376 733 PRINTS Chloride channel signature 458 474 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi3g0376 733 PRINTS Chloride channel signature 183 202 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi3g0376 733 PRINTS Chloride channel signature 234 253 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi3g0376 733 PRINTS Chloride channel signature 476 495 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi3g0376 733 PRINTS Chloride channel signature 413 433 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi3g0376 733 SMART cbs_1 588 636 IPR000644 -
Vvi3g0376 733 SMART cbs_1 663 716 IPR000644 -
Vvi3g0376 733 MobiDBLite consensus disorder prediction 511 530 - -
Vvi3g0376 733 FunFam Chloride channel protein 565 714 - -
Vvi3g0376 733 Pfam CBS domain 581 634 IPR000644 -
Vvi3g0376 733 CDD Voltage_gated_ClC 96 504 - -
Vvi3g0376 733 Gene3D Clc chloride channel 72 518 - -
Vvi3g0376 733 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 68 722 - -
Vvi3g0376 733 MobiDBLite consensus disorder prediction 511 538 - -
Vvi3g0376 733 FunFam Chloride channel protein 76 521 - -
Vvi3g0376 733 Pfam Voltage gated chloride channel 180 507 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi3g0376 733 SUPERFAMILY CBS-domain pair 577 709 IPR046342 -
Vvi3g0376 733 SUPERFAMILY Clc chloride channel 87 509 IPR014743 -
Vvi3g0376 733 Gene3D - 564 713 IPR046342 -
Vvi3g0376 733 CDD CBS_pair_voltage-gated_CLC_euk_bac 585 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0376 Vvi-Chr3 3080553 3095942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0376 62 255 Ion Channels AT3G27170 26.697 4.99e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0376 - - vvi:100253731 1352.81