Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0371 ATGGAGAAATCAGGGGCATGGAGTTCTAGTCCCTCAACTTCCTCATCAGTAAAAGAGTATCAATCCACCGGTAGTATTATAGATGGGAAGCAGACATTGGAGGTGTTTGAACCGGCACGGAGCCAGGATTTAGAACAGCTGCGTACTGATTATAAGGGTGACAATGAAGATATAGCAGCATCGGCACAAGTAGTAGAGCAGGGAGGCTCTAGTAGGGAGCCTATCAACAAGTGGATGGCATTTCAGAGGGAGGCTTCTGGGAAGTCTAACGTCACTGATAATTCCATTACAGGTGTAAAAGCTGAAGGAGTTAGTCCAGTTGAGCGGTCTCCTTCTTCTAATCAGATTTTTACCTCAGCAAGCACAATAGCTGAAAGAACTGCAGAATGGGGGCTGGTTATGAAATCGGATTTGGGAGACGGTCTGCGAGCATTGGGAAGGTCATTTGGAGAAGGGGATCGAAGCAAAAAGTCGTTAGAGAGACTTGCAGGGGAAACAACTAGGACATCAGAGGAATCCAATTATGAAGGTGAATCAGGGTCCTTCCCCAGGGTATCTCAAGAGTTGAAGGATGCTTTGTCAACCCTGCAGCAGACTTTCGTTGTTTCAGATGCTACCAAACCAGACTGCCCCATTATGTTTGCCAGCAGTGGGTTTTTTAGCATGACTGGTTACACTTCCAAGGAGGTCATTGGAAGGAACTGCCGCTTTCTTCAGGGACCAGATACAGACGAGAACGAAGTTGCCAAAATACGAAATTCTGTCAAAACTGGGAATAGCTACTGTGGCAGGCTCTTGAATTACAAGAAGGATGGCACTCCTTTCTGGAATCTTCTAACCATCACCCCCATTAAAGATGACAAGGGGAATGTCATCAAATTCATTGGAATGCAGGTCGAGGTCAGCAAATATACAGAAGGTGTGAATGAAAAGGCAGTTCGACCAAATGGATTGCCTCAGTCACTAATCCGTTATGATGCTCGTCAGAAGGAGAAGGCTTTGGGCTCGATCACAGAAGTTGTTCAAACCGTGAAGCATCCCCATTCTCATGCTCATGCTCGAACTATGAGTCATGATGGTACAGTCAAGAATGAAGAGGTGGAAAAGTTCCACCTTGATTATCTTCTGCCTAAATCTGCTGAGCTTGACAACATAAGCACACCTGGTAGACAAACTCCTCAAGTGGATTCCAGAAATATCTCCCGCTCTGGTTCTCGTCAGGAAGCTGGCAAGAAATCTAGAAAATCGGCACGGATTTCTTTAATGGGGTTTAAATCAAAATCTATAAGTTCCTTTAGTGCACAAGAGTGTCAGCCAAGTATTGAGCCAGAGATTTTGATGACTAAAGACATAGAACGCTCTGACAGTTGGGAACGTGCTGAAAGAGAAAGGGATATACGTCAAGGAATTGACTTAGCAACCACTCTAGAGCGCATTGAAAAGAATTTTGTGATAACCGATCCAAGACTTCCTGATAACCCAATTATATTTGCCTCTGACAGCTTTCTTGAATTAACAGAGTATACTCGTGAAGAAATATTGGGAAGAAATTGTCGATTTCTTCAGGGACCTGAAACTGATCAAGGAACCGTCTCAAAGATAAGAGATGCTATCAGACAACAAAGGGAAATCACTGTTCAGTTGATCAACTACACAAAGAGCGGAAAGAAATTCTGGAATTTATTCCACTTGCAGCCCATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTCCAATTAGATGGAAGTGATCATCTGGAACCCCTCCGAAACCGCCTGTCAGAGCAAACTGAGCAACAAAGTGCTAAGCTGGTCAAAGCTACTGCAGAAAATGTTGATGAAGCTGTTCGAGAACTTCCTGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATCCACTCTCAACCTGTCTTCCCAAAGCCTCACAAGAAGAATAACTCTTCTTGGATAGCAATACAAAAGGTACTGATTTATAAATTTGATTTCTAA 1995 0.4376 MEKSGAWSSSPSTSSSVKEYQSTGSIIDGKQTLEVFEPARSQDLEQLRTDYKGDNEDIAASAQVVEQGGSSREPINKWMAFQREASGKSNVTDNSITGVKAEGVSPVERSPSSNQIFTSASTIAERTAEWGLVMKSDLGDGLRALGRSFGEGDRSKKSLERLAGETTRTSEESNYEGESGSFPRVSQELKDALSTLQQTFVVSDATKPDCPIMFASSGFFSMTGYTSKEVIGRNCRFLQGPDTDENEVAKIRNSVKTGNSYCGRLLNYKKDGTPFWNLLTITPIKDDKGNVIKFIGMQVEVSKYTEGVNEKAVRPNGLPQSLIRYDARQKEKALGSITEVVQTVKHPHSHAHARTMSHDGTVKNEEVEKFHLDYLLPKSAELDNISTPGRQTPQVDSRNISRSGSRQEAGKKSRKSARISLMGFKSKSISSFSAQECQPSIEPEILMTKDIERSDSWERAERERDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTVSKIRDAIRQQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHLEPLRNRLSEQTEQQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPKPHKKNNSSWIAIQKVLIYKFDF* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0371 664 PANTHER PROTEIN TWIN LOV 1 384 656 - -
Vvi3g0371 664 ProSiteProfiles PAS repeat profile. 468 541 IPR000014 -
Vvi3g0371 664 Coils Coil 592 612 - -
Vvi3g0371 664 MobiDBLite consensus disorder prediction 1 29 - -
Vvi3g0371 664 Gene3D PAS domain 457 621 - -
Vvi3g0371 664 SMART pac_2 262 304 IPR001610 -
Vvi3g0371 664 SMART pac_2 545 587 IPR001610 -
Vvi3g0371 664 MobiDBLite consensus disorder prediction 147 167 - -
Vvi3g0371 664 FunFam Putative LOV domain-containing protein 199 355 - -
Vvi3g0371 664 CDD PAS 212 301 IPR000014 -
Vvi3g0371 664 MobiDBLite consensus disorder prediction 382 417 - -
Vvi3g0371 664 MobiDBLite consensus disorder prediction 1 41 - -
Vvi3g0371 664 NCBIfam PAS domain S-box protein 493 583 IPR000014 -
Vvi3g0371 664 NCBIfam PAS domain S-box protein 212 302 IPR000014 -
Vvi3g0371 664 Gene3D PAS domain 199 367 - -
Vvi3g0371 664 Pfam PAS domain 491 583 IPR000014 -
Vvi3g0371 664 Pfam PAS domain 206 302 IPR000014 -
Vvi3g0371 664 SUPERFAMILY PYP-like sensor domain (PAS domain) 484 583 IPR035965 -
Vvi3g0371 664 ProSiteProfiles PAC domain profile. 542 596 IPR000700 -
Vvi3g0371 664 SMART pas_2 187 256 IPR000014 -
Vvi3g0371 664 SMART pas_2 470 539 IPR000014 -
Vvi3g0371 664 MobiDBLite consensus disorder prediction 384 404 - -
Vvi3g0371 664 MobiDBLite consensus disorder prediction 147 183 - -
Vvi3g0371 664 SUPERFAMILY PYP-like sensor domain (PAS domain) 206 298 IPR035965 -
Vvi3g0371 664 CDD PAS 483 583 IPR000014 -
Vvi3g0371 664 ProSiteProfiles PAS repeat profile. 185 258 IPR000014 -
Vvi3g0371 664 FunFam LOV domain-containing protein 457 621 - -
Vvi3g0371 664 ProSiteProfiles PAC domain profile. 259 313 IPR000700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0371 Vvi-Chr3 3043515 3048390 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0371 117 657 AGC Kinase Gene Family AT5G58140 68.921 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0371 K20715 - vvi:100241765 1283.09