Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0368 ATGGAAATCAGCAGCTCTCAAAATGGTAGCATCATGTGGTTCTTCAGGGATAAAGGTTTTGATGATAAGAGCATCCATGAAATGTTCAAGAAGTGCAAGCGCTTAGAGGGTGTGCACAGGGACAGAGCCTCTGAGAACTGGGCTTACTTGAGAACCATTGGTATTCAGGATAGAAAGATACCTTCCATTGTTACAAAGTGCCCTAAAATCCTTGCTCTAGGCCTCAATGAGAAGATTGTCCCTATGGTCCAGTGCCTTGCCACTTTGGGAACAAAACCCAGTGAGGTTGCTTCAGCCATAGCCAAATTTCCTCACATACTCTCTCATAGTGTGGAAGAGAAGCTCTGTCCCCTCCTGGCTTTCTTTCAGGCACTGGGAGTCCCTGAGAAGCAACTTGGAAAGGTGATCTTGGTCAATCCTCGGCTCATCAGCTATAGTATTGAATCTAAGCTTACACAAATTGTTGACTTTCTTGCTAGTCTTGGCTTTACCAGAGAGGGGATGATTGGTAAAGTTTTGCAGAAATACCCATTTATCATGGGCTATAGTGTTGATAAAAGGCTACGCCCTACTTCAGAGTTCTTGAAATTAATTGGTCTGACAGAGCAGGATCTTCAAAAAGTGGCAATGAATTTCCCTGAAGTCTTCTGTAGAGATGCAAACAAGATTCTGAGCCCCAATGTTGCTTATCTAAAGAGAAGAGGGTTTGAAGATGGACAGATAGCAGCTCTAGTGTCTGGTTATCCCCCTATTTTGATCAAGAGCATAAAGAATTCTTTAGAACCTAGGATAAGGTTTTTGGTAGAAGTAATGAAGAGAGATATTAATGAAGTTGTTAACTATCCTGACTTCTTCCGTTGCGGTTTAAAGAAGACATTGGAGTTGAGGCAAAAACTTTTGGAACAGAGGAAAATAGAATGTAGCTTGAGTGAAATGCTTGATTGTAATCAAAAGAAGTTCTTATTAAAGTTTAATTTGATTGAAAGACCTACCTAA 996 0.4086 MEISSSQNGSIMWFFRDKGFDDKSIHEMFKKCKRLEGVHRDRASENWAYLRTIGIQDRKIPSIVTKCPKILALGLNEKIVPMVQCLATLGTKPSEVASAIAKFPHILSHSVEEKLCPLLAFFQALGVPEKQLGKVILVNPRLISYSIESKLTQIVDFLASLGFTREGMIGKVLQKYPFIMGYSVDKRLRPTSEFLKLIGLTEQDLQKVAMNFPEVFCRDANKILSPNVAYLKRRGFEDGQIAALVSGYPPILIKSIKNSLEPRIRFLVEVMKRDINEVVNYPDFFRCGLKKTLELRQKLLEQRKIECSLSEMLDCNQKKFLLKFNLIERPT* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0368 331 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Vvi3g0368 331 SMART mt_12 61 92 IPR003690 GO:0003690|GO:0006355
Vvi3g0368 331 SMART mt_12 242 274 IPR003690 GO:0003690|GO:0006355
Vvi3g0368 331 SMART mt_12 170 201 IPR003690 GO:0003690|GO:0006355
Vvi3g0368 331 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Vvi3g0368 331 SMART mt_12 206 237 IPR003690 GO:0003690|GO:0006355
Vvi3g0368 331 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Vvi3g0368 331 FunFam transcription termination factor MTERF6, chloroplastic/mitochondrial 96 328 - -
Vvi3g0368 331 PANTHER CGI-12 PROTEIN-RELATED 131 245 IPR003690 GO:0003690|GO:0006355
Vvi3g0368 331 Pfam mTERF 110 321 IPR003690 GO:0003690|GO:0006355
Vvi3g0368 331 Pfam mTERF 10 167 IPR003690 GO:0003690|GO:0006355
Vvi3g0368 331 Gene3D Transcription termination factor 3, mitochondrial 82 327 IPR038538 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi3g0368 mTERF 1.2e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0368 K15032 - vvi:100252027 657.521