Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0364 ATGGAAAACGAAGTGATCGAATTCGATATTGGGTTGGGAGGAGGGCAAGTTGGTGGAGGAGATGAGGATGGTGTGGACATTGAGCATCCCGTTGACGACGAAGAAATTGTCGATACTCCTCCCGGCGGTGGCCTTGGCTCTGGTGAAATTTACATTCCCGAGGGTGACCTTGATCTTGAACCTTATGAGGGCATGGAATTCGAGTCCGAAGAGGCTGCCAAGGCTTTCTACAATTCCTATGCTCGCCGTGTTGGCTTCAGTACCCGCGTCAGCTCGTCTCGTCGTTCCAGGCGCGACGGAGCTATCATTCAGAGGTCCTTTGTTTGTGCTAAAGAGGGGTTCCGGAATTTGAACGAGAAGCGCACCAAGGATAGGGAGATCAAGCGTCCCCGCACCATCACCAGAGTGGGTTGCAAAGCTTCGCTCTCCGTTAAGATACAAGATTCCGGGAAATGGGTTGTTTCTGGATTTACTAAGGAACACAATCACGAACTGGTTCCCCCCGATAAGGTGCATTGCCTCCGCTCTCATAGGCAAATCTCCGGCCCTGCTAAGACCTTGATCGACACCTTGCAGGCTGCTGGAATGGGTCCTCGTAGGATTATGTCTGCCCTAATCAAAGAGTATGGCGGAATTAGTAAAGTTGGGTTCACCGAGGTAGACTGTAGGAATTACATGAGAAATAATCGCCAGAGGAGCTTGGAAGGCGACATTCAGCTCCTTCTTGATTACTTGAGGCAAATGCATGCCGAAAACCCATCTTTTGTATATGCTGTGCAGGGCGATGACGATCAGTCCCCGAGCAATGTCTTCTGGGCTGACCCCAAGTCAAGGATGAACTACACTTACTTTGGTGACACAGTTACATTTGACACAACTTACAGGTCCAACAGGTACCGTCTGCCCTTTGCACCCTTCACTGGGGTAAACCATCATGGGCAGCCTGTTTTGTTTGGTTGCGCATTCCTAATAAATGAATCTGAAGCATCTTTCATTTGGCTATTTAAGACTTGGCTCATGGCAATGTCTGGTCGGCCCCCAGTGTCGATCACAACTGATCACGATGCAGTGATCGGTTTAGCCATCTCACAAGTTTTCCCAGAAACCCGGCACCGATTCTGCAAATGGCACATCTTTAAGAAATGTCAGGAGAAGTTGTCTCATGTGTTTCTTAGGCATCCAACTTTTGAAGCCGACTTTCATAAATGTGTGAACTTGACTGATTCAACTGAGGAGTTTGAGTCTTGCTGGTTGTCACTTGTTGATAAATATGATCTCAGGGATCATGAGTGGCTTCAAACGATACACTCTGCTCGCAGGCAGTGGGTCCCTGTATATCTGAGGGACGCATTTTTTGCAGAAATGTCTATAACCCAACGTAGTGATAGTATGAACTCATACTTCGATGGGTATGTGAATGCTTCAACCAATCTAAGTCAGTTTTTTAAGCTGTATGAGAAAGCTTTGGAGAGTCGCAATGAGAAAGAAGTGAAAGCAGATTATGATACAATGAACACTTCTCCGGTACTGAGGACCCCATCTCCAATGGAGAAACAAGCATCAGAGCTTTACACTAGAAAATTATTCGTGAGATTTCAAGAGGAGTTGGTTGGGACACTTACATTCATGGCCTCCAAAGCTGATGATGATGGGGAGACCACCACATATCAAGTAGCAAAATTTGGGGAGGATCATAAAGCTTACTATGTTAAATTCAATGTTTTGGAGATGAGAGCAACTTGTAGCTGTCAGATGTTTGAGTTTTCAGGTTTGCTTTGCAGACATGTATTGGCAGTCTTTAGAGTTACGAATGTTCTTACTCTTCCATCTCATTATATTTTAAAACGGTGGACAAGAAATGCCAAGAGCAGTGTTATATTGGAAGAACGTGCCAGTGATGTATTGAATAGTTATCTAGAGTCTCATACAGTTCGCTATAATACCCTACGCCATGAAGCATTTAAATTTGCTGATGAAGGGGCAAAGTCTATTGACACTTATAATGTGGCAATGAGTTCTCTACAAGAAGCTGCTAAAAAAGTTGCTCTTGCAGCAAAAACTGAGGGAAGATTTGACATGGTCAATGGGCATTTCAGGGGTCAGTCCACGAGTGATGGGAGTAGGGCATATTATACCAGTGGGGAACACCAAGGAAGCTTAGGCCAAAATTTGTCTGAGGATGATATGGACAGGAAAATCCGAGAACTCACAGAGGAATTGAACTGTGCAAATGGAAAGTGTGAGGTATACCGGGCGAACCTGCTTTCAGTTTTGAAAGATATTGATGAACATAAACAACAGCTGTCAGTTAAAGTGCAAAATGTAAAGCTTAGTATGAAAGACAGCTTCTAA 2352 0.449 MENEVIEFDIGLGGGQVGGGDEDGVDIEHPVDDEEIVDTPPGGGLGSGEIYIPEGDLDLEPYEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRSFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKIQDSGKWVVSGFTKEHNHELVPPDKVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLLLDYLRQMHAENPSFVYAVQGDDDQSPSNVFWADPKSRMNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFIWLFKTWLMAMSGRPPVSITTDHDAVIGLAISQVFPETRHRFCKWHIFKKCQEKLSHVFLRHPTFEADFHKCVNLTDSTEEFESCWLSLVDKYDLRDHEWLQTIHSARRQWVPVYLRDAFFAEMSITQRSDSMNSYFDGYVNASTNLSQFFKLYEKALESRNEKEVKADYDTMNTSPVLRTPSPMEKQASELYTRKLFVRFQEELVGTLTFMASKADDDGETTTYQVAKFGEDHKAYYVKFNVLEMRATCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSHYILKRWTRNAKSSVILEERASDVLNSYLESHTVRYNTLRHEAFKFADEGAKSIDTYNVAMSSLQEAAKKVALAAKTEGRFDMVNGHFRGQSTSDGSRAYYTSGEHQGSLGQNLSEDDMDRKIRELTEELNCANGKCEVYRANLLSVLKDIDEHKQQLSVKVQNVKLSMKDSF* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0364 783 Coils Coil 726 753 - -
Vvi3g0364 783 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 53 682 IPR031052 GO:0006355
Vvi3g0364 783 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Vvi3g0364 783 Pfam MULE transposase domain 288 381 IPR018289 -
Vvi3g0364 783 SMART 26again6 579 606 IPR006564 GO:0008270
Vvi3g0364 783 MobiDBLite consensus disorder prediction 696 726 - -
Vvi3g0364 783 Pfam FAR1 DNA-binding domain 76 167 IPR004330 -
Vvi3g0364 783 MobiDBLite consensus disorder prediction 697 724 - -
Vvi3g0364 783 Pfam SWIM zinc finger 556 602 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0364 Vvi-Chr3 3000568 3006751 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi3g0364 MULE 1.5e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0364 - - vvi:100267491 1550.41