Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0363 ATGGAGAAATCTAGAAGGGAAGATTCAGATTTGAAGAAGAGTCACCGGGATCGGGATCGGAATGGAGAGAGACACAGGGAGAGGGAGAGAGACAAGGAGAAGAAAGAGCACCGGGAGAGTCGGCGCTCGGAGAGAGAGAAGAGTAGTGATGACAAGCATAGGGAGAAGGAGAGGGATAAGCACAGGGATAAGCGGGACAAGGAACGAACAAGGAGCAGCCGGGATGATGAACGAGATAGAGCGAGAGAAAGAACCAAGGACAGAGAAAAGGAGAGGGACAGGGACCATGAAGGTCGAGATGCTGAAAGAGAGAAGGAGAGAGAGAGGGATAAGGAGAGCAGAGAGAGGGCAAGGGAGAAAGAACGTGAGGATAGAGAGAGGGAGCGAGAACGAGAGAAGGAAAGAGAGAGGGAGAAGGCAAGGGAGAGGGAGAGGGAGAAGGAGAGGGAAAGAGAGAAGGAGAGGGAGAGAGAGAGAGAAAGAGAAAGAGAGAAGAGAGATAGGGAGAGGGAAGATAGAGAGAGAGAGAAGGAAAGAGATAGAGAGAGGTTACGGGAAAGGGAAAAGCGTCGGGAGCCTGATAGGAATGATAGTAGTGATGGTGATGATGTCAGAGACCGTGATAGAAAGCGGCGCAGGAGAGATGATGATTACAAGGATAGAGAGCGTGATCGGAGTGGCAGGTCTAACAGGCACAGAGATGAAGGTGAAGACAGCCCTAGAAAGAAGAGCGATGATGATGATTTGGATAAGAAAGAGAGAAGAACTCGAGAAGAAGATTTAGAGGAAGAACAACGGAAACTGGATGAGGAAATGGAAAAACGGAGGAGAAGAGTTCAGGAGTGGCAAGAATTAAAGAGAAAGAGGGAAGAATCTGAGAGAGAAAAGCTGGGAGAGGCTGCGAATGCTGATGAGCCCAAGTCTGGCAAGACCTGGACCCTAGAAGGAGAATCTGATGATGAAGATGTTGCCCCAACTGGCAATTCTGAGACAGATTTGAACATGGATGAAGATGCCAAGCCCACTGATAATGAAGTTGGAGATGGTATGGCAATAGATTCTCAAAATGGAACTTCTGCATCCACTCTGCAGAATGGGGATGAAGGTGCTGATGGAGATGAGGAAATTGATCCATTAGATGCTTTCATGAATTCTATGGTGTTGCCTGAAGTAGAGAAGCTAAACAATGCTGCAGTTTCTCCAACTAGCAATGCTGTGGTTCCCAGTGAAGATTCTGATTCAGACTATGGTGACCTTGAAAACAATGAAGATCCTTTGGAGGAAGAAGATGATGATGAGTTCATGAAAAGGGTGAAAAAGACAAAGGCTGAGAGACTATCAATTGTTGACCACTCAAAAATAGATTATAAACCATTCCGGAAAAATTTCTATATTGAAGTAAAGGAGAGTGCAAGGATGACTCCTGAAGAGATTGCTGCTTACAGGAAACAGTTGGAATTGAAGATACATGGCAAGGATGTGCCAAAGCCGGTGAAAACCTGGCACCAGACTGGGCTGACAACTAAAATCTTAGACACCATAAAAAAGCTTAACTATGAAAGACCAATGCCAATTCAAGCTCAGGCACTTCCAATAATTATGAGTGGTCGAGACTGCATAGGTATTGCAAAGACTGGCTCTGGTAAAACCCTAGCATTTGTGTTGCCAATGTTGAGGCATATCAAGGACCAGCCACCTGTGATGCCTGGAGATGGGCCTATTGGCCTTATAATGGCACCTACAAGGGAGCTTGTCCAGCAGATCCATAGTGACATCAAGAAATTTGCCAAAGTAGTGGGTATTAGCTGTGTGCCTGTGTATGGGGGTTCTGGTGTTGCACAACAAATTAGTGAATTAAAGCGGGGGGCTGAGGTTGTTGTCTGCACTCCAGGGAGAATGATTGATATACTTTGTACAAGTGGCGGAAAAATTACAAATTTGCGTAGGGTGACATATTTGGTCATGGATGAAGCTGATCGAATGTTCGACATGGGTTTTGAACCTCAGATCACTAGAATTGTTCAAAATACTCGACCTGACCGTCAAACTGTGCTATTCTCTGCCACTTTCCCTCGTCAGGTTGAAATTTTGGCCCGTAGAGTGTTGAACAAACCTGTGGAAATACAGGTTGGTGGGAGAAGTGTTGTGAATAAGGACATAAGCCAGTTGGTCGAGGTGAGACCTGAAAGTGAAAGGTTCTTCAGACTGTTAGAACTACTAGGAGAATGGTATGAAAAAGGAAAAATTTTGATATTTGTTCACTCGCAGGAAAAATGTGATTCTCTGTTCAGGGATTTGCTTAAGCATGGTTATCCTTGCCTCTCACTTCATGGAGCTAAGGATCAGACAGACCGTGAATCCACCATTTCTGATTTCAAGAGTAATGTATGCAATTTGTTGATTGCAACAAGTGTTGCTGCCAGGGGTTTAGATGTGAAGGAGTTAGAGTTGGTAATTAATTTTGATGTTCCAAACCATTATGAAGACTATGTTCATCGTGTTGGTCGGACAGGTAGAGCTGGCCGGAAAGGCTCTGCTATCACATTTATCTCTGATGACGATGCAAGATATGCACCAGATCTAGTGAAAGCCTTGGAGCTCTCTGAGCAAGTTGTTCCTGATGACCTGAAAGCTCTTGCGGATGGTTTTATGGCAAAAGTGAATCAGGGACTTGAGCAAGCCCATGGGACTGGGTATGGTGGAAGTGGTTTTAAATTTAATGAAGAGGAGGATGAAGTCAGGAGAGCAGCAAAGAAAGCTCAGGCAAAAGAATATGGCTTTGAGGAAGACAAGTCAGACTCAGATGATGAAGATGAAGGGGTCCGAAAGGCAGGTGGTGACATCTCACAGCAAGCTGCCCTTGCTCAAATAGCTGCTATTGCTGCTGCCTCCAAAGTTGGTGCCGTTTCAATGCCAAGCACTGTTCCAGCTGCTCAACTGCTTCCAAATGGTGGGCTCCCTGTATCTCTGTCAGGTGTCCTTGGTTTGACAATACCAGGCTCTGTAGCAGCAGCTGTGCCGGGGTCTGTGCTGCCAATGACCCCTAATGATGGGGCAGCTCGGGCAGCAGCCTTGGCTGCTGCCATCAACTTGCAACACAACCTTGCAAAGATTCAAGCTGATGCAATGCCTGAACATTATGAAGCTGAGTTGGAGATTAATGATTTCCCCCAGAATGCTAGATGGAGGGTGACCCACAAAGATACTTTGATTCCAATTTCAGAATGGACCGGAGCTGCCATTACCACAAGGGGGCAGTACTATACAACAGGTAAGGTCCCAGGACCAGGAGAGCGCAAGCTCTACTTGTTCATTGAGGGCCCTACTGAACAATCTGTCAAGAGAGCAAAAGCAGAACTAAAACGTGTCTTGGAGGACTTCACAATTCAGGCTATTTCAAATCCTAGTGCAGTCCAACCAGGCAAATACTCTGTTGTGAAATAA 3444 0.4585 MEKSRREDSDLKKSHRDRDRNGERHRERERDKEKKEHRESRRSEREKSSDDKHREKERDKHRDKRDKERTRSSRDDERDRARERTKDREKERDRDHEGRDAEREKERERDKESRERAREKEREDREREREREKEREREKAREREREKEREREKEREREREREREKRDREREDREREKERDRERLREREKRREPDRNDSSDGDDVRDRDRKRRRRDDDYKDRERDRSGRSNRHRDEGEDSPRKKSDDDDLDKKERRTREEDLEEEQRKLDEEMEKRRRRVQEWQELKRKREESEREKLGEAANADEPKSGKTWTLEGESDDEDVAPTGNSETDLNMDEDAKPTDNEVGDGMAIDSQNGTSASTLQNGDEGADGDEEIDPLDAFMNSMVLPEVEKLNNAAVSPTSNAVVPSEDSDSDYGDLENNEDPLEEEDDDEFMKRVKKTKAERLSIVDHSKIDYKPFRKNFYIEVKESARMTPEEIAAYRKQLELKIHGKDVPKPVKTWHQTGLTTKILDTIKKLNYERPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVMPGDGPIGLIMAPTRELVQQIHSDIKKFAKVVGISCVPVYGGSGVAQQISELKRGAEVVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARRVLNKPVEIQVGGRSVVNKDISQLVEVRPESERFFRLLELLGEWYEKGKILIFVHSQEKCDSLFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGSAITFISDDDARYAPDLVKALELSEQVVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSDDEDEGVRKAGGDISQQAALAQIAAIAAASKVGAVSMPSTVPAAQLLPNGGLPVSLSGVLGLTIPGSVAAAVPGSVLPMTPNDGAARAAALAAAINLQHNLAKIQADAMPEHYEAELEINDFPQNARWRVTHKDTLIPISEWTGAAITTRGQYYTTGKVPGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDFTIQAISNPSAVQPGKYSVVK* 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0363 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 857 IPR027417 -
Vvi3g0363 1147 SMART helicmild6 760 841 IPR001650 -
Vvi3g0363 1147 Coils Coil 102 190 - -
Vvi3g0363 1147 FunFam probable ATP-dependent RNA helicase DDX17 461 711 - -
Vvi3g0363 1147 Pfam Helicase conserved C-terminal domain 735 841 IPR001650 -
Vvi3g0363 1147 Pfam DEAD/DEAH box helicase 524 695 IPR011545 GO:0003676|GO:0005524
Vvi3g0363 1147 MobiDBLite consensus disorder prediction 398 432 - -
Vvi3g0363 1147 Coils Coil 251 285 - -
Vvi3g0363 1147 Gene3D - 710 883 IPR027417 -
Vvi3g0363 1147 SMART ultradead3 518 723 IPR014001 -
Vvi3g0363 1147 Gene3D - 451 709 IPR027417 -
Vvi3g0363 1147 PANTHER RNA HELICASE 443 919 - -
Vvi3g0363 1147 MobiDBLite consensus disorder prediction 1 303 - -
Vvi3g0363 1147 MobiDBLite consensus disorder prediction 1 381 - -
Vvi3g0363 1147 MobiDBLite consensus disorder prediction 349 366 - -
Vvi3g0363 1147 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 499 527 IPR014014 GO:0003724
Vvi3g0363 1147 CDD SF2_C_DEAD 720 850 - -
Vvi3g0363 1147 MobiDBLite consensus disorder prediction 915 943 - -
Vvi3g0363 1147 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 654 662 IPR000629 -
Vvi3g0363 1147 CDD KH-I_AtRH42_like 1043 1145 - -
Vvi3g0363 1147 MobiDBLite consensus disorder prediction 413 431 - -
Vvi3g0363 1147 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 719 880 IPR001650 -
Vvi3g0363 1147 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 530 708 IPR014001 -
Vvi3g0363 1147 MobiDBLite consensus disorder prediction 915 929 - -
Vvi3g0363 1147 CDD DEADc_DDX46 488 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0363 Vvi-Chr3 2992982 2996425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0363 486 861 Eukaryotic Initiation Factors Gene Family AT3G19760 32.368 8.95e-56 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0363 K12811 - vvi:100262258 1709.5