Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0361 ATGGCTGGCATGGAACAAGGCGCAGGTTCTCGCTACATCCACCAGCTCTTCAGACCTGAATTGCAATTAGAAAGAACACCACAGCAGCCACACCAACCACCCCAACTCAACGATTCCGGAGACTCGCCGGAAAACGAAGATAGAACTGACCCTGATGGAAGTCCAGGTGCAGCGACCACTTCCTCTCGCCGCCCTCGAGGGCGTCCACCAGGCTCCAAAAACAAGGCCAAGCCACCAATTATCATCACTCGCGACAGCCCAAATGCGCTGAGATCACATGTGCTGGAAATCTCAGCGGGCGCGGACATAGTGGAATCGGTGTCAAACTATGCAAGGAGGCGTGGCCGTGGAGTTTGCATCCTCAGCGGCGGCGGAGCTGTGACTGACGTCACCTTGCGCCAGCCAGCTGCCCCATCCGGGAGTGTCGTGACGCTGCACGGGCGGTTTGAGATACTGTCTCTCACGGGAACAGCACTGCCGCCACCTGCGCCACCGGGGGCTGGGGGCTTGACAATATATTTAGGAGGAGGGCAGGGTCAGGTGGTGGGAGGAAGGGTGGTGGGGCCACTGGTGGCTTCTGGTCCGGTTCTATTGATGGCGGCATCGTTTGCAAATGCAGTGTATGACCGATTACCGCTGGAGGAGGAGGAGGAATCGCCAGTGCAGGTGCAGCCAACAGCCTCACAGTCCTCTGGGGTGACAGGCGGTGGGGGGCAATTGGGTGACGGGGGAAACGGCAGCACCACCACTGCTGGCGGAGGTGCGGGTGCAGGTGTTCCTTTTTACAATTTGGGACCGAATATGGGGAATTATCCTTTTCCTGGTGATGTATTTGGCTGGAATGGGGGTGCAACAAGGCCTCCATTTTAG 870 0.5805 MAGMEQGAGSRYIHQLFRPELQLERTPQQPHQPPQLNDSGDSPENEDRTDPDGSPGAATTSSRRPRGRPPGSKNKAKPPIIITRDSPNALRSHVLEISAGADIVESVSNYARRRGRGVCILSGGGAVTDVTLRQPAAPSGSVVTLHGRFEILSLTGTALPPPAPPGAGGLTIYLGGGQGQVVGGRVVGPLVASGPVLLMAASFANAVYDRLPLEEEEESPVQVQPTASQSSGVTGGGGQLGDGGNGSTTTAGGGAGAGVPFYNLGPNMGNYPFPGDVFGWNGGATRPPF* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0361 289 MobiDBLite consensus disorder prediction 25 40 - -
Vvi3g0361 289 CDD DUF296 91 157 IPR005175 -
Vvi3g0361 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 242 IPR014476 GO:0003680
Vvi3g0361 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 219 - -
Vvi3g0361 289 MobiDBLite consensus disorder prediction 1 81 - -
Vvi3g0361 289 FunFam AT-hook motif nuclear-localized protein 90 219 - -
Vvi3g0361 289 PIRSF ESCAROLA 4 289 IPR014476 GO:0003680
Vvi3g0361 289 MobiDBLite consensus disorder prediction 221 252 - -
Vvi3g0361 289 Gene3D - 90 228 - -
Vvi3g0361 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 91 204 IPR005175 -
Vvi3g0361 289 MobiDBLite consensus disorder prediction 214 252 - -
Vvi3g0361 289 ProSiteProfiles PPC domain profile profile. 87 224 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0361 Vvi-Chr3 2980543 2981412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0361 10 289 AT-hook Motif Nuclear Localized (AHL) Family AT4G35390 59.539 7.87e-77 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0361 - - vvi:100245113 468.388