Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0356 ATGGGTGCCCTTCAAGCCATGGTTGTTTGCTTGTTTCTAGTGCGTGCATGCACAACCAATGCCCAGGTTGAGCAATGGAAGTCTGCCACTGCAACATACTCCAAAGAAACAGATGCTTCAATCATAACTGAAGGTGCTTGTGGTTATGGGGACCTTCACAAGACCAGCTATGGAAAGTACAGTGCTGGACTCAGTACCATGTTGTTCAATAGAGGCAGTACCTGTGGGGGCTGCTTTGAATTGAGATGTGTTGATCACATCTTGTGGTGTCTCCAGGGGAGCCCATCTGTTATCCTCACTGCCACAGACTTTTGTCCACCAAATTTTGGGCTTCCAACTGATTATGGTGGCTGGTGCAATTTCCCCCAAGAACATTTTGAGATGTCCGAAGCCGCCTTTGCTGAAATTGCAGGGTTACATGCTGATATAGTTCCAGTTCAGTACAGGAGGGTTAAGTGTCACAGAAATGGAGGAATGAGATTTACAGTGAGTGGGAATTCCCACTACTATCAAGTGTTAATCACCAATGTTGGGTTGGATGGAGAAGTTGTGGCAGTGAAAGTGAAGGGATCAAGAACAGGGTGGATACCCATGGCAAGGAACTGGGGACAAATCTGGCAATGCAATATTAACCTTGAAGGACAACCTCTATCTTTTGAGGTGACAACCAGCAGTGGAAAAACACTCACCTCCTACAATGTTGCTTCAGGAAATTGGAGATTTGGTCAGACATTTGAAGGGAAACAGTTCTAG 753 0.4582 MGALQAMVVCLFLVRACTTNAQVEQWKSATATYSKETDASIITEGACGYGDLHKTSYGKYSAGLSTMLFNRGSTCGGCFELRCVDHILWCLQGSPSVILTATDFCPPNFGLPTDYGGWCNFPQEHFEMSEAAFAEIAGLHADIVPVQYRRVKCHRNGGMRFTVSGNSHYYQVLITNVGLDGEVVAVKVKGSRTGWIPMARNWGQIWQCNINLEGQPLSFEVTTSSGKTLTSYNVASGNWRFGQTFEGKQF* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0356 250 PANTHER EXPANSIN-A15 6 250 IPR002963 GO:0009664
Vvi3g0356 250 Pfam Lytic transglycolase 62 148 IPR009009 -
Vvi3g0356 250 SUPERFAMILY Barwin-like endoglucanases 9 176 IPR036908 -
Vvi3g0356 250 Pfam Expansin C-terminal domain 159 235 IPR007117 -
Vvi3g0356 250 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
Vvi3g0356 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Vvi3g0356 250 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Vvi3g0356 250 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Vvi3g0356 250 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Vvi3g0356 250 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Vvi3g0356 250 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Vvi3g0356 250 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Vvi3g0356 250 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Vvi3g0356 250 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Vvi3g0356 250 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Vvi3g0356 250 SMART dpbb_1 61 148 IPR007112 -
Vvi3g0356 250 Gene3D - 155 250 IPR036749 -
Vvi3g0356 250 CDD DPBB_EXPA_N 25 153 - -
Vvi3g0356 250 Gene3D - 14 154 IPR036908 -
Vvi3g0356 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 158 IPR007112 -
Vvi3g0356 250 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vvi3g0356 250 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Vvi3g0356 250 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Vvi3g0356 250 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Vvi3g0356 250 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Vvi3g0356 250 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0356 Vvi-Chr3 2934516 2935485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0356 4 250 Expansin Gene Family AT4G38210 63.200 2.81e-119 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0356 - - vvi:100255490 530.791