Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0343 ATGGAGGGGTATAATATCTTCGTCTCGGTCGCCTTCGTATCCGCTCTAATCTGCGCCGTCGGCCTCCTAGTGGTGGGCCGCTGCGTCTGCCTCCGCTACTTCTACCACCACGGCGGTGGGAACACCGCAGCGAGCAGCTCCACGGCGCAGTCGCCGCCAAACGGGGGTCCAAAGGAGGAGAGGATTCTCTCGTCAGTCCCCAGAGTGAGATACACCGGCGGCGACGGAAAAGTGGGGGAGTGTGCAATATGTTTGACAGAGTTTATGAAGGGAGATGAGATGAGCGTGATGCCGCAGTGTGGTCATGGGTTCCATGTGAAGTGCATAGAGAGGTGGATGCGGCGGAGCTCGTCGTGTCGGCAGATTCTGGCGGAGCCCAGTAGGCGATAG 390 0.5949 MEGYNIFVSVAFVSALICAVGLLVVGRCVCLRYFYHHGGGNTAASSSTAQSPPNGGPKEERILSSVPRVRYTGGDGKVGECAICLTEFMKGDEMSVMPQCGHGFHVKCIERWMRRSSSCRQILAEPSRR* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0343 129 SUPERFAMILY RING/U-box 80 123 - -
Vvi3g0343 129 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 9 123 - -
Vvi3g0343 129 MobiDBLite consensus disorder prediction 41 62 - -
Vvi3g0343 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 122 IPR013083 -
Vvi3g0343 129 ProSiteProfiles Zinc finger RING-type profile. 81 119 IPR001841 -
Vvi3g0343 129 SMART ring_2 81 119 IPR001841 -
Vvi3g0343 129 Pfam RING-like zinc finger 80 109 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0343 Vvi-Chr3 2873799 2874188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0343 6 123 C3H Transcription Factor Family AT1G20823 44.615 6.67e-29 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0343 - - vvi:104878763 238.424