Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0342 ATGAATCTGGTTTGGCTTGTGTTGCTTTTGATCCTTTGTATTAGAGGATACACTGAAGGGGTTTTGAATCCTGAAGTTGTGAATATTGGAGCTATATTCACATTTAGCACTATCAATGGGAAAGTTGCAAAGATAGCCATGAAGGCGGCTGAACAAGATGTGAATTCTGATCCAAGCATTCTTGGTGGGAGAAAACTGGCTATAACCCTGCATGATTCCAACTATAGCGGATTTCTCAGCATCGTTGGGGCATTACAATTCATGGAGTCTGACACAGTAGCTATTATTGGTCCACAAAGTGCTGTGATGGCCCATGTACTCTCACATCTTGCAAATGAGCTTCATGTTCCACTACTGTCATTCACAGCCCTGGACCCGGCCCTCTCGCCTCTCCAGTTCCCTTACTTTATTCAAACTGCTCCCAGTGATCTATTCCAGATGACTGCCATTGCAGATATGGTTAGTTATTTTGAATGGAGAGAGGTTATTGCAGTATACTCTGATGATGATCAAAGCCGAAATGGGATAACTACATTAGGTGATAAACTTGCAGAAAGGCAGTGTAAAATCTCCTACAAAGCAGCCCTTCCCCCTGACCCAAAAGCAACTCGTGATCAGGTTTTTAATGAATTGGTGAAGGTTCGAATGATGGAATCCCGAGTAATTGTTCTTCATACTCTTTCCAAAACAGGTCTTTTGGTTTTTGATGTTGCCAAATACCTTGGGATGATGGAGAGTGGTTATGTTTGGATAGCTTCTACTTGGCTATCTACCATACTAGATTCTACTCCGCTTTCCTCCAAGACTGCCGATTCGATCCAAGGAGTTCTCACACTTCGTCCTCATACACCTGATTCAAAAAAGAAAAGGGAGTTTTCATCTAGGTGGAACCATCTGAGTAATGGAACTATTGGTTTGAATCCTTATGGTTTATATGCCTATGATACTGTTTGGATGATTACTTATGCACTTAAAACATTTTTCGATCAGGGTGGCACCATCTCATTCTCCAATATTACATCTGGGACTGCCTTGGTGGCAGGAGAACTGAATCTTGGTGCATTGAGCATTTTTGATGGGGGACAGCAGTTGCTTAAGAACATACTGCAGATCAATAGGACAGGTTTAACTGGCCCTCTACGATTTGGTCCAGACAGATCCCCGGTACATCCTGCATATGAGGTCATTAATGTAGTTGGAACTGGATTCAGGCAGCTTGGATACTGGTCTGACTATTCTGGGCTCTCTGTTGCATCTCCAGATACGCTTTATGCAAAACCGCCTAACCGTTCAAGATCAAACCAACAGTTGTATGATGTATTATGGCCTGGTGAAATAACAAAGAAGCCTCGTGGGTGGGTCTTTCCAAACAATGGGAGACATCTAAGGATTGGAGTTCCAAACCGGGTTAGTTATCGTGATTTTGTGTCAAAAGGAAAAGATACTGATGACCTCCATGGATATTGCATTGATGTATTCACTGCTGCAATAGCCTTGCTCCCATATGCAGTCCCATATAAGTTTGTTCTGTTTGGGGATGGTCTGGAAAACCCGAACTACAACCAGCTTGTATACAAGGTTGCCTCTAATGACTTCGATGCTGCTGTTGGGGACATTGCAATTGTCACCAATCGTACAAAGGCTGTGGATTTTACTCAGCCATATATAGAATCAGGCCTAGTTGTAGTGGCCCCAGTCAAGAAGCTGAACTCAAGTGCTTGGGCTTTCTTGAAGCCTTTTAGTCCATTGATGTGGGGTATAACAGCATCATTTTTCCTTATTGTGGGAGCAGTTGTGTGGATTCTCGAACATCGGATCAATGATGATTTCAGGGGGCCACCTAAGAAACAGATTGTCACAATGTTATGGTTTTCCTTCTCAACCCTGTTTTTTTCCCATAGAGAAAACACAGTAAGCTCACTCGGGCGTATGGTGCTGATCATCTGGCTTTTTGTAGTTCTGATAATCAACTCAAGCTACACTGCAAGCCTGACATCAATCCTGACTGTGCAACAACTATCTTCATCCATTAAAGGAATTGAAACATTGATAACTAGCAATGATCGTATTGGATTCCAAGTAGGGTCCTTTGCAGAGAACTATTTAAGTGACGAACTTGACATCCCTAAATCTAGACTCATTGCTCTTGGCTCACCAGAAGAATATGCCACTGCCCTTGAGAATGGAACTGTCGCTGCTGTGGTTGATGAACGACCCTACATAGAAGTCTTCCTTGCCAGCCACTGCAAGTTCTCAATTGTAGGGCCTCAGTTCACTAGAAGCGGGTGGGGATTTGCATTTCCAAGAGACTCTTCCTTAACTGTTGACTTGTCAACTGCCATCCTCACACTATCAGAGAACGGTGATCTTCAAAGAATCCATGATAAGTGGCTGAAAAATAAAGTTTGTTCAGACAACTCTCAGCTTGGATCTGACCAACTTCAGTTCCAGAGCTTCTGGGGCCTTTTCCTCATCTGTGGGATTGCATGCTTCCTTGCTCTCCTTGTATACTTCTGCATGATGGTACGCCAATTCAGCAAGCAGTTTTCTGAAGCAAGTCCTTCCAGCCATGGCAGCTCTCTCTCTGCACGCCTTCAAACATTCCTATCATTTGTTGATAACAAGGCAGAGGTATCAAAAGCCAAGTCCAAAAGAAAACGCGGAGACATGTCTTTAGATTCCAATGGCAGGGAAGACAAATCAAGAAATGGATCCACGAGAACAAAACAAACAGATCTCCCATCAGAGATTTAA 2754 0.4317 MNLVWLVLLLILCIRGYTEGVLNPEVVNIGAIFTFSTINGKVAKIAMKAAEQDVNSDPSILGGRKLAITLHDSNYSGFLSIVGALQFMESDTVAIIGPQSAVMAHVLSHLANELHVPLLSFTALDPALSPLQFPYFIQTAPSDLFQMTAIADMVSYFEWREVIAVYSDDDQSRNGITTLGDKLAERQCKISYKAALPPDPKATRDQVFNELVKVRMMESRVIVLHTLSKTGLLVFDVAKYLGMMESGYVWIASTWLSTILDSTPLSSKTADSIQGVLTLRPHTPDSKKKREFSSRWNHLSNGTIGLNPYGLYAYDTVWMITYALKTFFDQGGTISFSNITSGTALVAGELNLGALSIFDGGQQLLKNILQINRTGLTGPLRFGPDRSPVHPAYEVINVVGTGFRQLGYWSDYSGLSVASPDTLYAKPPNRSRSNQQLYDVLWPGEITKKPRGWVFPNNGRHLRIGVPNRVSYRDFVSKGKDTDDLHGYCIDVFTAAIALLPYAVPYKFVLFGDGLENPNYNQLVYKVASNDFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVKKLNSSAWAFLKPFSPLMWGITASFFLIVGAVVWILEHRINDDFRGPPKKQIVTMLWFSFSTLFFSHRENTVSSLGRMVLIIWLFVVLIINSSYTASLTSILTVQQLSSSIKGIETLITSNDRIGFQVGSFAENYLSDELDIPKSRLIALGSPEEYATALENGTVAAVVDERPYIEVFLASHCKFSIVGPQFTRSGWGFAFPRDSSLTVDLSTAILTLSENGDLQRIHDKWLKNKVCSDNSQLGSDQLQFQSFWGLFLICGIACFLALLVYFCMMVRQFSKQFSEASPSSHGSSLSARLQTFLSFVDNKAEVSKAKSKRKRGDMSLDSNGREDKSRNGSTRTKQTDLPSEI* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0342 917 PIRSF IGluLR_plant 1 916 IPR017103 -
Vvi3g0342 917 SMART GluR_14 463 800 IPR001320 GO:0015276|GO:0016020
Vvi3g0342 917 Gene3D - 454 572 - -
Vvi3g0342 917 FunFam Glutamate receptor 457 573 - -
Vvi3g0342 917 CDD GluR_Plant 462 798 - -
Vvi3g0342 917 Pfam Receptor family ligand binding region 44 400 IPR001828 -
Vvi3g0342 917 FunFam Glutamate receptor 573 703 - -
Vvi3g0342 917 Gene3D - 45 390 - -
Vvi3g0342 917 Gene3D - 764 797 - -
Vvi3g0342 917 Gene3D - 725 763 - -
Vvi3g0342 917 Pfam Bacterial extracellular solute-binding proteins, family 3 472 799 IPR001638 -
Vvi3g0342 917 Gene3D - 142 415 - -
Vvi3g0342 917 FunFam Glutamate receptor 142 298 - -
Vvi3g0342 917 SUPERFAMILY Periplasmic binding protein-like I 23 454 IPR028082 -
Vvi3g0342 917 Gene3D - 573 699 - -
Vvi3g0342 917 MobiDBLite consensus disorder prediction 876 917 - -
Vvi3g0342 917 FunFam Glutamate receptor 764 797 - -
Vvi3g0342 917 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 874 IPR015683 -
Vvi3g0342 917 MobiDBLite consensus disorder prediction 877 906 - -
Vvi3g0342 917 SUPERFAMILY Periplasmic binding protein-like II 440 802 - -
Vvi3g0342 917 CDD PBP1_GABAb_receptor_plant 28 417 IPR044440 -
Vvi3g0342 917 FunFam Glutamate receptor 728 763 - -
Vvi3g0342 917 SMART AABind_6 461 801 IPR001638 -
Vvi3g0342 917 Pfam Ligand-gated ion channel 800 830 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0342 Vvi-Chr3 2868608 2872367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0342 24 895 Ion Channels AT2G17260 63.360 0.0 1154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0342 K05387 - vvi:100241875 1797.33