Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0333 ATGGGTTGCTTTTCTTGCTTGAGCCCTCGGAGGGATGATGTCAGCATGATCGAGGGCAGTGGGCAGAGGCGCCATTCCGCTGATTTTCCAGACCATGGGAAGGGAGGATCAGTGAGTAACAAAGGCAAGGATAAAAGCAGCCAAAATGGCACTGGTGCAAAAAGTTTCACCTTTCAACAACTCATTAATGCAACAAGAAGTTTCAAGGTCATGATTGGAGAAGGGGGTTTTGGGAAGGTTTATAAAGGCAAGCTAGAAAATGGCCAGATTGTTGCAATCAAATGGCTCAATCATGAGGGCATTCAAGGAAGTCAGGAATTTATCATGGAGGTTCTCTTGTTGAGCCTTTTGCGCCATTCTAATCTTGTCTGCTTAATTGGCTACTGTACTGATGGAGATCAAAGGCTCTTGGTTTATGAATACATGCCCATGGGAAGCTTGGAAGATCATCTCTTTGACGTTGGCCCCAACAAGGCACCATTGGAATGGAACACCCGGATGAAAATTGCTGTTGGCACTGCTAGGGGCCTGGAGTATCTTCACTGCAAAGCAAACCCACCTGTCATCTACCGAGATTTGAAATCTGCAAATATACTCTTGGACAATGACTTCCATCCCAAGCTTTCTGATTTTGGACTTGCTAAATTTGGACCTGTTGGTGACAACACCCATGTTACAACCCGGGTTATGGGAACACATGGATATTGCGCCCCGGAGTATGCAATGAGTGGTAAACTGACCCTCAAATCTGATGTATATAGCTTTGGTGTTGTTTTGTTGGAACTGATCACTGGACGGATGGCAATCGACTCTACTAGGTTGCAGGGAGAGCAGAACCTAGTAAATTGGGCTCGGCCTCTCTTCAAGGACCGGAGGCGATTCTCTCAGCTGGTGGATCCTCTGTTGCGAGGCCGCTTCCCTGTCCGGTGTCTACACCATGCAATTGCCATAACTGCAATGTGCCTGCAGGAGCAGGCTACATACCGGCCACTGATAAGTGATGTTCTGGTAGCTCTGGAGTACTTGGCCTCCCAACCTTACAACCCAGAAGCTCATTCTCGTGGCAGCCCCTCACCTTGCTCCCCTCTCCATGCCTAA 1098 0.4809 MGCFSCLSPRRDDVSMIEGSGQRRHSADFPDHGKGGSVSNKGKDKSSQNGTGAKSFTFQQLINATRSFKVMIGEGGFGKVYKGKLENGQIVAIKWLNHEGIQGSQEFIMEVLLLSLLRHSNLVCLIGYCTDGDQRLLVYEYMPMGSLEDHLFDVGPNKAPLEWNTRMKIAVGTARGLEYLHCKANPPVIYRDLKSANILLDNDFHPKLSDFGLAKFGPVGDNTHVTTRVMGTHGYCAPEYAMSGKLTLKSDVYSFGVVLLELITGRMAIDSTRLQGEQNLVNWARPLFKDRRRFSQLVDPLLRGRFPVRCLHHAIAITAMCLQEQATYRPLISDVLVALEYLASQPYNPEAHSRGSPSPCSPLHA* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0333 365 ProSiteProfiles Protein kinase domain profile. 66 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0333 365 MobiDBLite consensus disorder prediction 16 31 - -
Vvi3g0333 365 CDD STKc_IRAK 72 340 - -
Vvi3g0333 365 MobiDBLite consensus disorder prediction 16 52 - -
Vvi3g0333 365 Pfam Protein kinase domain 70 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0333 365 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524
Vvi3g0333 365 SMART serkin_6 66 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0333 365 SUPERFAMILY Protein kinase-like (PK-like) 51 340 IPR011009 -
Vvi3g0333 365 FunFam serine/threonine-protein kinase PBS1-like 36 141 - -
Vvi3g0333 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Vvi3g0333 365 FunFam Serine/threonine-protein kinase PBS1 142 356 - -
Vvi3g0333 365 Gene3D Phosphorylase Kinase; domain 1 38 141 - -
Vvi3g0333 365 Gene3D Transferase(Phosphotransferase) domain 1 142 354 - -
Vvi3g0333 365 PANTHER OS07G0668900 PROTEIN 41 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0333 Vvi-Chr3 2766406 2771200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0333 1 346 Glycoside Hydrolase AT3G07070 59.557 8.68e-151 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vvi3g0333 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0333 - - vvi:100854748 743.806