Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0332 ATGGGGATTTGCTGGAGTTCTTCTAAGGATACCATAACTCCTATCACCACTGGCAATCTCAGTACAGCTGGGGTGTCTCAGACAACCACCAACACTACATCTTCACGGGGCAGCAACTTCTCCAGAAACAGCCAGTTCTCTGCAGCCAGCGGAGGCAGTGATGAGGCCTTCCCCAATGGTCAGATCTTGCCTCATCCCAATTTAAGGATCTTTACTTTTTCAGAACTGAAGGCTGCAACAAAAAATTTCAGACCTGATACAGTTCTGGGAGAGGGTGGTTTTGGGAAAGTTTTCAAGGGTTGGCTAGATGAGAAGGTGTCAAAGAGCGGCAGTGGAACTGTAATTGCTGTCAAGAAATTGAACTCTGAGAGCATGCAAGGATTTGAAGAATGGCAGTCTGAGGTCAATTTCTTAGGAAGACTTTCTCATCCTAACCTTGTCAAGCTGTTGGGATATTGCTGGGAGGATAAAGAGCTGCTACTGGTATATGAATTCATGCAGAAAGGCAGCTTAGAGAACCATCTTTTTGGAAGGGGCGCAACTGTTCAGCCACTTCCTTGGGACATACGGCTTAAGATTTCTATAGGTGCAGCTCGAGGGCTGACTTTCTTGCATACATCAGAGAAGCAAGTGATTTACAGGGACTTCAAGGCATCAAATATATTGCTTGATGGGTCCTATACTGCCAAGATATCAGACTTTGGCTTGGCAAAATTGGGTCCAACAGCTAGTCAGTCACATGTGACCACACGGGTTATGGGAACATATGGTTATGCCGCTCCTGAGTATGTAGCCACAGGGCATTTGTATGTAAAGAGCGATGTGTATGGTTTTGGTGTTGTCTTGGTGGAGATGCTAACAGGCTTACGGGCACTGGATACTACCCGTCCCAGTGGGCAACATAATCTGGTGGACTGGATCAAACCACACCTTTCAGATAGACGAAAGTTGAAAACCATAATGGATGCCAGACTGGAGGGAAGATATCCTTCAAAAGCTGCAAATCAAATAGCTCAGCTTTCTCTAAGGTGTATTGGATCTGAACATAAAAGCCGGCCATCAATGAAAGAAGTTCTAGAGACTCTGGAGCGGATTGAAGCTTACAACGAGAGACCAAGGGAGCCTAGAGTAAGACCTGCACGTCCTGCTGTTCAACGACATGGCCAACCGCCTTTGCACCATCGCTCTCCACTTCACCCAAGGCAGAATGGAAGTCAAGCCAATCAACACTCACCTTGGGCAAGGTAA 1248 0.4655 MGICWSSSKDTITPITTGNLSTAGVSQTTTNTTSSRGSNFSRNSQFSAASGGSDEAFPNGQILPHPNLRIFTFSELKAATKNFRPDTVLGEGGFGKVFKGWLDEKVSKSGSGTVIAVKKLNSESMQGFEEWQSEVNFLGRLSHPNLVKLLGYCWEDKELLLVYEFMQKGSLENHLFGRGATVQPLPWDIRLKISIGAARGLTFLHTSEKQVIYRDFKASNILLDGSYTAKISDFGLAKLGPTASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEMLTGLRALDTTRPSGQHNLVDWIKPHLSDRRKLKTIMDARLEGRYPSKAANQIAQLSLRCIGSEHKSRPSMKEVLETLERIEAYNERPREPRVRPARPAVQRHGQPPLHHRSPLHPRQNGSQANQHSPWAR* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0332 415 MobiDBLite consensus disorder prediction 399 415 - -
Vvi3g0332 415 MobiDBLite consensus disorder prediction 16 54 - -
Vvi3g0332 415 ProSitePatterns Protein kinases ATP-binding region signature. 89 119 IPR017441 GO:0005524
Vvi3g0332 415 Pfam Protein tyrosine and serine/threonine kinase 87 362 IPR001245 GO:0004672|GO:0006468
Vvi3g0332 415 FunFam Serine/threonine-protein kinase BIK1 51 165 - -
Vvi3g0332 415 PANTHER OS01G0588500 PROTEIN-RELATED 37 366 - -
Vvi3g0332 415 ProSiteProfiles Protein kinase domain profile. 83 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0332 415 Gene3D Phosphorylase Kinase; domain 1 67 165 - -
Vvi3g0332 415 SUPERFAMILY Protein kinase-like (PK-like) 61 362 IPR011009 -
Vvi3g0332 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Vvi3g0332 415 CDD STKc_IRAK 89 365 - -
Vvi3g0332 415 FunFam Serine/threonine-protein kinase PBS1 166 379 - -
Vvi3g0332 415 Gene3D Transferase(Phosphotransferase) domain 1 166 378 - -
Vvi3g0332 415 MobiDBLite consensus disorder prediction 16 58 - -
Vvi3g0332 415 MobiDBLite consensus disorder prediction 369 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0332 Vvi-Chr3 2761422 2764553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0332 69 362 Glycoside Hydrolase AT3G07070 49.492 2.24e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi3g0332 PK_Tyr_Ser-Thr 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0332 - - vvi:100255530 788.104