Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0330 ATGATAAGCCCCAAGAAGCTCATCAAAATGGCAAGGAAGTGGCAGAGAAGAGCAGCCCTTGGGAGGAAAAGAATTTCTTCACCAAGAACTGATGCTGATATGGATGCAGGCACTTGTAGCACATCAGTGGCTGATAAAGGCCATTTTGTTGTATATCCCACTGATAAGAGGCGGTTTATGATTCCCTTGGTGTATCTCAGCAATAACATCTTCAGAGAGCTCTTTAAGATGTCTGAGGAGGAGTTTGGACTGCAAAGTGATGGGCCTATAACATTGCCTTGTGATTCAGTCTTCATGCAGTACATACTCCCACTCATTCAACGTGGGGTAGCTAAAGATATGGAGAAAGCCTTGATCTTCTCCCTTGTTACCAGTCGCTGCTCACAATCATCTTCCCATCAAGAACATATAAGCCAACATTTACTTGTTTGTGGCTATTAA 441 0.4331 MISPKKLIKMARKWQRRAALGRKRISSPRTDADMDAGTCSTSVADKGHFVVYPTDKRRFMIPLVYLSNNIFRELFKMSEEEFGLQSDGPITLPCDSVFMQYILPLIQRGVAKDMEKALIFSLVTSRCSQSSSHQEHISQHLLVCGY* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0330 146 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 137 IPR003676 GO:0009733
Vvi3g0330 146 Pfam Auxin responsive protein 5 105 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0330 Vvi-Chr3 2755416 2755856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0330 6 108 Calmodulin-binding Proteins AT4G34750 27.184 3.07e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0330 - - vvi:100257334 288.5