Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0329 ATGATCAGCCCAAAGAAACTCATCAGAATGGCAAGGAAGTGGCAGAAGGTAGCGGCCCTTGGAAGGAAGAGGATTTTGTTACAAAGAATCAACAGGGAAGTGGATGCAGACAGCTGCAGCACGTCAACAGTGGCTGATAAGGGCCATTTTGTTGTTTACACCTCTGACAGAAAACGCTTTGTGATTCCCTTGGCATATCTTGGCAGTGAAGTCTTCAGAGAGCTTTTCCAAATGTCTGAAGAGGAGTTTGGGATACAAAGTGCAGGCCCCATCATATTGCCATGTGATTCAGTCTTTATGGATTATGTGATTTCATTCATCCAACAAGGAGTTGCAAAAGATTTAGAGAGAGCTTTGATCATGTCTATAGCTTCAAGTAACCGCTCATCTTCTTCATACTTCCATCAAGAACAGAACAATGAACCATTACTATTATGTGCCTTCTGA 447 0.4251 MISPKKLIRMARKWQKVAALGRKRILLQRINREVDADSCSTSTVADKGHFVVYTSDRKRFVIPLAYLGSEVFRELFQMSEEEFGIQSAGPIILPCDSVFMDYVISFIQQGVAKDLERALIMSIASSNRSSSSYFHQEQNNEPLLLCAF* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0329 148 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 140 IPR003676 GO:0009733
Vvi3g0329 148 Pfam Auxin responsive protein 8 106 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0329 Vvi-Chr3 2751841 2752287 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0329 13 109 Calmodulin-binding Proteins AT4G34750 28.000 3.59e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0329 - - vvi:100248635 264.233