Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0328 ATGGCAAGGAAGTGGCAGAAGATAGCTGCCATGAAGAGGAAGAGAATTTCTCTACCAAGAACAGATATGGTTTTGGATGCTGACTGTTGTAGTACATCATCAGTGGCAGATAAGGGCCATTTTGTTGTTTACAGTGCTGATAGGAGACGCTTTGTGATTCCTTTGGTGTATCTCAACAATGAAATCTTCAGACAGCTTTTGCAAATGTCTGAGGAGGAGTTTGGGGTACAAAGTGAAGGCCCCATCATATTGCCATGTGATTCAGTCTTTATGGACTATGCAATCTCATTCATCCAACGTGGTGTAGCAAAAGATTTGGAGAGAGCTTTGATCATGTCTATAGGTTCAAGTAACTGCTCATCCTCTGCATACTTCCATCAAGGACAGAGCAATGAGCAATTACTACTATGTGCCTTCTAA 420 0.419 MARKWQKIAAMKRKRISLPRTDMVLDADCCSTSSVADKGHFVVYSADRRRFVIPLVYLNNEIFRQLLQMSEEEFGVQSEGPIILPCDSVFMDYAISFIQRGVAKDLERALIMSIGSSNCSSSAYFHQGQSNEQLLLCAF* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0328 139 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 133 IPR003676 GO:0009733
Vvi3g0328 139 Pfam Auxin responsive protein 4 97 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0328 Vvi-Chr3 2749512 2749931 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0328 1 100 Calmodulin-binding Proteins AT4G34750 33.663 2.44e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0328 - - vvi:100253733 270.781