Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0327 ATGATCAGTCCAAAGAAACTCATCAGAATGGCAAGGAAATGGCAGAAGGTAGCAGCCCTAGGAAGGAAGAGGATTTCATTACAGAGAATCAACAGGGGTGTGGATGCAGACAGCTGCAGCACATCAACAGTGGCTGATAGGGGTCATTTTGTTGTTTACAGCTCTGACAGAAGACGCTTTGCAATTCCCTTGGCTTATCTTAATAGTGAAATCTTCAGAGAGCTTTTTCAAATGTCTGAGGAGGAGTTTGGGATACAAAGTGCAGGCCCCATCATATTGCCGTGTGATTCAGTCTTTATGGATTATGTGATCTCATTCATCCAACGAGGAGTTGAAAAAGATTTGGAGAGAGCTTTGATCATGTCTATAGCTTCCAGTAGCTGCTCATCTTCTTCATACTTCCACCAAGAACAGAACAATGAATCATTACTATTATGTGCCTTCTGA 447 0.4228 MISPKKLIRMARKWQKVAALGRKRISLQRINRGVDADSCSTSTVADRGHFVVYSSDRRRFAIPLAYLNSEIFRELFQMSEEEFGIQSAGPIILPCDSVFMDYVISFIQRGVEKDLERALIMSIASSSCSSSSYFHQEQNNESLLLCAF* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0327 148 Pfam Auxin responsive protein 8 106 IPR003676 GO:0009733
Vvi3g0327 148 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 141 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0327 Vvi-Chr3 2747634 2748080 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0327 6 109 Calmodulin-binding Proteins AT4G34750 29.907 4.87e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0327 - - vvi:100258880 265.388