Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0322 ATGGAAGATGGTTCTTTTACTCCTAATTCAGTATTTGGAGCCCCCTCAGACAGCGCCATGGATCTGAATTTTATGGATGAGCTCTTATTTGAAGGATGCTGGTTGGAGACCACTGATGGATTCAGTTTTTTGCAACCAGGTGCCTCCACTTCCAGTGCTTTGAATGACTCATCACACCATTCACTTACCTTTGAGAATCCAAACACACCTGAGAAAAGCTATGGAGATGATGGCCAAAGATCAAGCTTACCTGAAAATCCACCCCCATTTTATCCCCAAGCGGAAGGACTTGTTGGAACTCAGTCTGACAACTGGAAAACCTTTGAAGCTGCAACAGCTTCAGGCCAATCTGAAAGTTTTCTGGTTGAAAGAACTGAACTGAACAGAAGATTGTGGATTGGACCAAGTGCAAATCCAGGTCCTGTTTCCTCAGTGAAGAACAGATTGATTCTGGCAATTAGAAACTTGAGAGAATTTACTAAAGAGAGGGATGTCCTTATTCAGATATGGGTCCCTATAGAGAGAGGTGGCAAAAATGTTCTTACAACAAATGACCAACCATTCTCCCTTGATCCTGACTGCCAGAGTCTGGCAAATTATAGAAATGTTTCTGAGAATTATCACTTCCCTGCTGAGGAGGATTCAAAGGAGCAGGTTGGGTTGCCTGGCCGTGTTTTCTTGGGGAAGGTGCCTGAATGGACCCCTGATGTCCGTTTCTTTAAGAGTGAAGAGTACCCACGTATCAATTATGCCCAACGATACAATGTTCGGGGATCACTTGCACTTCCTGTTTTTGAACGAGGGAGTGGGGTTTGCTTGGGTGTCATTGAGATTGTGACAACTACTCAAAAGATCAATTATCGTCCTGAACTTGAAAATGTCTGCAAAGCTCTCGAGGCTGTTGATCTTCGGAGTTCTGAAGTTTTAATCCCACCTGTCAAGGCTTGCAATGAACTGTATCAAGCTGCATTGCCTGAGATTCTAAAGGTTTTGGCACGTGTCTGTCGGACACATAGATTACCTTTAGCTCAAACTTGGGCCCCATGTATCCAACAAGGTAAAGGTGGCTGCCGGCATTCTGATAAGAACTATGCTTTGTTTTTATCTACGGTTGATCATGCCTACTATGTGACTGATCCAAAATTTAAGGGCTTTAATGAGGCATGCTTCGATCACCACCTGTTTAGAGGACAGGGTGTTGTTGGCAGAGCATTAACAACAAATCAACCCTGTTTTGAAAGCGACATAACTGCCTTTAGCAAGACAGAATATCCTCTTTCTCACCATGCTAGGATGTTTGGGTTGCGTGCCGCTGTAGCAATCCGCCTAAAGAGCATCTATAATGGATCAGCTGATTTTATCTTGGAGTTTTTCTTACCAACAGATTGCCAAGAAACTGAAGAACAAAAGCAGGTGCTGAATTCATTATCCATTGTTATACAACAGACTTGTCAAATTTTCCGTGTTGTAACAGAGAAGGATCTAGAGAAAGAATCCATATTGCCAGTTGGTGAAATTTTATTTGCTTCAGATGAGAGAGTTAAACAAGAAGGATCTGTGAAATTGTTGTCACCTCCTATAAAAGAACCCTCTAGAGAAGAGTCATCCTGGATTGCCCATATGATGGAAGCCCAAAAGAAAGGTAAAGGTGTCTCTGTCTCGTTGGAGTATCAAAAGGAAGAGCCGGAAGAAGAGTTTAAAGTGACAACTAATTGGGATAACACTGAGGTGGAGTTACACCATGGGCAGGTATTCTCAGAGTTTGGGCAACCTCAGCAAAATTCAGGAGCCAAAGGTAGCGTTGAAGGTGGTGGAGATTCTTCTTTTGGTGGGCAACACTCATCAGGTAGCAGAAAAGCTCGAGAGAAGAGACGTACCAAGACAGAAAAGACTATCAGCTTGCAAGTTCTCAGCCAATACTTTGCTGGGAGCCTAAAAGATGCTGCTAAGAGTATTGGCGTGTGCCCCACTACCCTGAAAAGGATATGCAGGCAACATGGGATCACCCGTTGGCCTTCCCGGAAGATCAAGAAAGTTGGCCACTCATTAAGGAAACTCCAGCTTGTGATAGACTCAGTCCAAGGTACCCAGGGTGCTATTCAAATTGGGTCCTTCTATACAAACTTCCCAGAATTGAGCTCTCCAAATGTACCTGGGACTGTCCCATTTTCCTCATCCAAGATGACTGACGACTCAAAGCAATTAAACCCTCAATCTGAGGTGTTATTTAGCCCTGGAGTCACTACTTCAAAATCTCCCTCCTCTTCATGCAGTCAAAGCTCCAGTTCAAGTTTCTGTTGTTCGACTGGAGCAAAGCAGCAATCTACCACAGTCAATGCCTCAGTCAGTGGAGATGTTTTAATGGCAGAAGACCCTGTTTTGCTAAAGAGAACACGTAGTGATGCAGAGTTGCATGTCTCTAATCCAGATGAGCCAAAGCTTTTGGTAAGATCTCAAAGCCATAAATCCTTTGGTGAGCATCCTTGCGTTGAGACTTTACCTCCCCTGCCAAAGAGTAACAGCCGGGCCTTGCGCGATGGGGGTGGATTTAGAATCAAAGCCACTTTTGGTGAAGAGAATGTCCGGTTCAGCCTGCAGCTGAATTGGAGTTTCAAAGATCTACAACAAGAGATAGCGAGGCGATTTGGTATAGACAACATGAATAGCATTGATCTCAAGTATTTGGATGATGATTGTGAATGGGTTCTCTTGACATGCGATGCTGATCTTGAGGAGTGTATAGACGTATACAGATCATGCCAGAGCCGCAAAATTAAACTTTCTCTCCACCATTCTTCTCGTCTGAAACTGAAAAGTTCAGCTTTTAGCAGCGGTCCATCCTAA 2844 0.4388 MEDGSFTPNSVFGAPSDSAMDLNFMDELLFEGCWLETTDGFSFLQPGASTSSALNDSSHHSLTFENPNTPEKSYGDDGQRSSLPENPPPFYPQAEGLVGTQSDNWKTFEAATASGQSESFLVERTELNRRLWIGPSANPGPVSSVKNRLILAIRNLREFTKERDVLIQIWVPIERGGKNVLTTNDQPFSLDPDCQSLANYRNVSENYHFPAEEDSKEQVGLPGRVFLGKVPEWTPDVRFFKSEEYPRINYAQRYNVRGSLALPVFERGSGVCLGVIEIVTTTQKINYRPELENVCKALEAVDLRSSEVLIPPVKACNELYQAALPEILKVLARVCRTHRLPLAQTWAPCIQQGKGGCRHSDKNYALFLSTVDHAYYVTDPKFKGFNEACFDHHLFRGQGVVGRALTTNQPCFESDITAFSKTEYPLSHHARMFGLRAAVAIRLKSIYNGSADFILEFFLPTDCQETEEQKQVLNSLSIVIQQTCQIFRVVTEKDLEKESILPVGEILFASDERVKQEGSVKLLSPPIKEPSREESSWIAHMMEAQKKGKGVSVSLEYQKEEPEEEFKVTTNWDNTEVELHHGQVFSEFGQPQQNSGAKGSVEGGGDSSFGGQHSSGSRKAREKRRTKTEKTISLQVLSQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGTQGAIQIGSFYTNFPELSSPNVPGTVPFSSSKMTDDSKQLNPQSEVLFSPGVTTSKSPSSSCSQSSSSSFCCSTGAKQQSTTVNASVSGDVLMAEDPVLLKRTRSDAELHVSNPDEPKLLVRSQSHKSFGEHPCVETLPPLPKSNSRALRDGGGFRIKATFGEENVRFSLQLNWSFKDLQQEIARRFGIDNMNSIDLKYLDDDCEWVLLTCDADLEECIDVYRSCQSRKIKLSLHHSSRLKLKSSAFSSGPS* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0322 947 MobiDBLite consensus disorder prediction 49 80 - -
Vvi3g0322 947 MobiDBLite consensus disorder prediction 586 628 - -
Vvi3g0322 947 MobiDBLite consensus disorder prediction 49 97 - -
Vvi3g0322 947 ProSiteProfiles PB1 domain profile. 849 932 IPR000270 GO:0005515
Vvi3g0322 947 PANTHER PROTEIN NLP8 56 945 IPR045012 GO:0003700
Vvi3g0322 947 ProSiteProfiles RWP-RK domain profile. 618 699 IPR003035 -
Vvi3g0322 947 CDD PB1_NLP 850 931 IPR034891 -
Vvi3g0322 947 Pfam RWP-RK domain 631 679 IPR003035 -
Vvi3g0322 947 Pfam PB1 domain 850 931 IPR000270 GO:0005515
Vvi3g0322 947 MobiDBLite consensus disorder prediction 586 615 - -
Vvi3g0322 947 Gene3D - 850 932 - -
Vvi3g0322 947 SMART PB1_new 849 932 IPR000270 GO:0005515
Vvi3g0322 947 SUPERFAMILY CAD & PB1 domains 840 933 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0322 Vvi-Chr3 2668403 2673028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0322 5 945 NLP Transcription Factor Family AT4G35270 54.876 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vvi3g0322 PB1 6.8e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0322 - - vvi:100267426 1855.49