Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0321 ATGAACATTAATACAGATTTAATTGTTCATACTTCCAAAAACCCAGTAGAGACATTTGGAAACTTGGATTCATCTCAGCAGAGTGGCAGTAATTACCAAATTCAGAATCAAAACCCCAGAAAGAAGCGTTCGAAGTTGATCCGAATCGATCCTTCTGTGGTGGCGAGCTCTAGTGGCATTGTGAAGGCGAAATCTGGAAAGAAGGCTGACCCGAGTGCTCCAAAGATCACTCGGCCGTGCAGTGAGTGTGGCAAGAAGTTTTGGTCATGGAAGGCCTTGTTTGGGCACATGAGGTGCCACCCTGAGAGGCAGTGGAGGGGGATAAACCCACCTCCCAATTATAGACGCTCCGAAAAGGGTGTGGAGGATGCGGATTTGGGGATGAGCGAGGATGATCATGAGGTTGCTGCCTGTTTGCTTATGCTGGCTAATGGGGCTGGTCCAATTGAGAGGATTAGTCACTGTATGCTGGCGTATCAGGCTGATGGGGCTGATGGGCTTGACGCATTGGGTGGGGGTTGTAGGTTTGAATGTTCAAGTTGTAAGAAGTGCAGTATCTGTTTGAGGGTGTTCTCTAGTGGTCAAGCCCTGGGTGGACACAAGAGGTGCCATTGGGAGAGAGGGGATGAGCCACCATCATCATTATCGTCACTCCCTCAAGGGCTCAACCCCTTTGCACCCAAGGCAGGTTTCGGTCTCGACTTGAACTTGCCTGCCCCATTGGAAGATGATTCCTATTGCTCTCATTCTTCAAATCTGGCTTTGGATTTAAGGCTGGGACTATGA 786 0.4924 MNINTDLIVHTSKNPVETFGNLDSSQQSGSNYQIQNQNPRKKRSKLIRIDPSVVASSSGIVKAKSGKKADPSAPKITRPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNYRRSEKGVEDADLGMSEDDHEVAACLLMLANGAGPIERISHCMLAYQADGADGLDALGGGCRFECSSCKKCSICLRVFSSGQALGGHKRCHWERGDEPPSSLSSLPQGLNPFAPKAGFGLDLNLPAPLEDDSYCSHSSNLALDLRLGL* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0321 261 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Vvi3g0321 261 MobiDBLite consensus disorder prediction 21 40 - -
Vvi3g0321 261 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
Vvi3g0321 261 SMART c2h2final6 182 204 IPR013087 -
Vvi3g0321 261 SMART c2h2final6 78 100 IPR013087 -
Vvi3g0321 261 SUPERFAMILY beta-beta-alpha zinc fingers 79 204 IPR036236 -
Vvi3g0321 261 Pfam C2H2-type zinc finger 79 102 - -
Vvi3g0321 261 Pfam C2H2-type zinc finger 183 206 - -
Vvi3g0321 261 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 12 261 - -
Vvi3g0321 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Vvi3g0321 261 MobiDBLite consensus disorder prediction 21 45 - -
Vvi3g0321 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 211 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0321 Vvi-Chr3 2660982 2661950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0321 36 261 C2H2 Transcription Factor Family AT4G35280 44.610 5.47e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi3g0321 zf-C2H2_6 1.8e-11 CL0361