Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0319 ATGGGTGACGAGGGCGATTCGAGGGACTCAAGCGTGGGTGGTGAAGGAGTCATTGTCAACATTCGATGCTCCAACGGCTCCAAATTCTCAGTCCGGACCTGCCTTGAATCGACGGTTGGGGCTTTCAAGGCTCTTCTGGCGCAGAACTGCGATGTTCCATCTGATCAGCAGCGGTTGATTTATAAGGGTCGGATCTTGAAAGACGACCAAACCCTAGAGAGCTATGGTTTGCAGGCAGATCACACTGTTCACATGGTTCGGGGTTTTGCCCCAGCTGCATCAACACCTGCGACTGGTGGTACTGCTTCTGCTACTACTGCTGCTACTGCTGGAAGTCCTCTTCCTCCAGGTTCAGGTGTCAGACAGGGTGCTAGTTCCGATGAAAGTGGGGGCATTGGAGCTGCTGGCATGAGGTCACCTTTATTTCCTGGACTTGGTTTGGGTAGTTTGGGCGGTACTGGAGCATCTGGGTTGTTTGGAGCTGGATTTCCTGAATTTGAGCAAGTGCAGCAGCAATTGACTCAGAACCCCAATATGATGAGGGAAATAATGAATATGCCTGCCATTCAGAACTTAATGAATAATCCTGACCTAATGCGCAGCTTGATTATGAATAACCCTCAAATGCGCGAGATCATTGACCGAAATCCTGAGCTTGCACATATACTTAATGATACTGGCATCCTCCGGCAGACCTTGGAGGCTGCAAGGAACCCTGAGCTGATGCGTGAGATGATGCGAAACACAGATAGGGCAATGAGTAACATTGAATCTTCTCCTGAGGGATTCAACATGCTCAGGCGTATGTATGAAAATGTTCAGGAACCATTTCTTAATGCTACGACAATGTCTGGTGACAGTGGAAACACTTTGGGTTCAAACCCATTTGCGGCTCTTTTAGGGAATCAAGGTGGGGCCCAAGCCAGAGATGGGTCTAACAACCCTTCTACCACTGGTGCTGAAGCAACGGCAGGGCTTACTGCTCCAAATACTAACCCACTTCCTAATCCTTGGAGTGCTGGTGGTGCCCAGACAAACAATACTGCGAGGTCAATTCCTGCTGGGGATGCAAGGGCTCCAAGTGTTGCTGGTTTGGGAGGGCTTGGTCTCCCGGAGATGGAACGCATGCTTAATGGCATGCCAGATGCTACCTTATTTAATCAGTTGTTGCAAAACCCAGCTGTGTCCCAGATGATGCAAAGCCTACTTTCCAACCCCCAGTATATGAATCAGATTCTCAACTTCAACCCACAACTGCGTGGTATGCTTGATATGAATCCTCAATTAAGAGAAATAATGCAAAACCCAGAACTTCTTCGTCAGTTAACTTCCCCTGAGACAATGCAGCAAATGATGTCTTTGCAGCAGTCACTTCTCTCTCAGCTTAATCGGCAGCAATCAACCCAGGAACCAGGTCAGACTGGTGGTGGGACTACAGCAGGAACACCCAATAATATTGGGTTGGACTTGTTGATGAACATGTTTGGTGGGCTTGGAGCTGGGAGCTTGAATGTTCCAAATACGCCTGATGTACCACCTGAACAACTCTATGCGACTCAACTGTCACAACTTCAAGAAATGGGTTTTTTTGACACTCAAGAGAACATCAGGGCACTGCGTGCTACTTCTGGGAATGTTCATGCTGCGGTGGAACGTCTCCTGGGTAATCCTGGCCAATAA 1680 0.4857 MGDEGDSRDSSVGGEGVIVNIRCSNGSKFSVRTCLESTVGAFKALLAQNCDVPSDQQRLIYKGRILKDDQTLESYGLQADHTVHMVRGFAPAASTPATGGTASATTAATAGSPLPPGSGVRQGASSDESGGIGAAGMRSPLFPGLGLGSLGGTGASGLFGAGFPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRSLIMNNPQMREIIDRNPELAHILNDTGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMSGDSGNTLGSNPFAALLGNQGGAQARDGSNNPSTTGAEATAGLTAPNTNPLPNPWSAGGAQTNNTARSIPAGDARAPSVAGLGGLGLPEMERMLNGMPDATLFNQLLQNPAVSQMMQSLLSNPQYMNQILNFNPQLRGMLDMNPQLREIMQNPELLRQLTSPETMQQMMSLQQSLLSQLNRQQSTQEPGQTGGGTTAGTPNNIGLDLLMNMFGGLGAGSLNVPNTPDVPPEQLYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNPGQ* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0319 559 CDD Ubl_Dsk2p_like 19 89 - -
Vvi3g0319 559 SUPERFAMILY Ubiquitin-like 9 99 IPR029071 -
Vvi3g0319 559 Gene3D - 15 101 - -
Vvi3g0319 559 SUPERFAMILY UBA-like 513 555 IPR009060 GO:0005515
Vvi3g0319 559 MobiDBLite consensus disorder prediction 301 360 - -
Vvi3g0319 559 CDD UBA_PLICs 517 555 - -
Vvi3g0319 559 Pfam UBA/TS-N domain 517 553 IPR015940 -
Vvi3g0319 559 FunFam Ubiquitin domain-containing protein DSK2b 14 100 - -
Vvi3g0319 559 Pfam Ubiquitin family 19 86 IPR000626 GO:0005515
Vvi3g0319 559 Gene3D - 201 259 - -
Vvi3g0319 559 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 511 556 IPR015940 -
Vvi3g0319 559 SMART uba_6 517 555 IPR015940 -
Vvi3g0319 559 MobiDBLite consensus disorder prediction 94 135 - -
Vvi3g0319 559 Gene3D - 499 559 - -
Vvi3g0319 559 SMART ubq_7 17 88 IPR000626 GO:0005515
Vvi3g0319 559 FunFam Ubiquitin domain-containing protein DSK2b 500 558 - -
Vvi3g0319 559 ProSiteProfiles Ubiquitin domain profile. 17 86 IPR000626 GO:0005515
Vvi3g0319 559 MobiDBLite consensus disorder prediction 455 485 - -
Vvi3g0319 559 MobiDBLite consensus disorder prediction 96 112 - -
Vvi3g0319 559 FunFam Ubiquitin domain-containing protein DSK2b 203 259 - -
Vvi3g0319 559 MobiDBLite consensus disorder prediction 306 352 - -
Vvi3g0319 559 PANTHER UBIQUILIN 17 554 IPR015496 -
Vvi3g0319 559 SMART CBM 152 193 IPR006636 -
Vvi3g0319 559 SMART CBM 416 451 IPR006636 -
Vvi3g0319 559 SMART CBM 206 245 IPR006636 -
Vvi3g0319 559 SMART CBM 370 412 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0319 Vvi-Chr3 2641633 2645487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0319 21 86 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.818 9.10e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0319 K04523 - vvi:100267604 969.918