Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0317 ATGGAGGGAGAGACGGGAGAGAAGGGGAGTGTTTGTGGTTCTTCAGAGGGAGATGTGATTGGGGAGATGATGGAAGTGATCGAGAATGTGGGATCGTACGTGGGGTTCAGGAGAACTCAGAGGAAGGAGAGTTTGAATCTTGTGAGGAGGTTGAAACTGCTGGTGCCTCTTCTGGAGGAGTTGAGGGAGCTTGGGACTGCAGCAGTTTCAGGGGAGGCTTTGGGGTGTTTGGCTAGACTGAAAAAGGCACTTGTTTCTGCTAAGAAATTGTTGAAGAACTGTAACTACGGAAGCAAGATTTACCTGGCACATGAGAGTGAGGCAGTGGCGGTTAGATTTCATGCTGTCTACGACAAATTGAATCAGGCATTGGATGATCTACCCTACAATGATCTGGGAATCTCTGATGAAGTGAAGGAGCAAGTTGAACTAATGCGAATGCAACTCAAGAGAGCAAAAAGACGAACAGAAACACAAGATATAGAGTTAGCAATGGACCTGATGGTTGTATTCTCGAAGACGGATGACAGAAATGCAGACACTGCGATATTAGAAAGACTTGCGAGCAAGTTGGAATTGCGTACAGTTGCAGACTTGAAGGTAGAAACAGTAGCTGTTAGGAAACTTGTAAAAGAAAGAGCTGGGTTGAGTGCAGAGGCCAGTCAGCAAATAGTAGAGCTTTTGGGAAAGTTCAAAAAACTGGCTGGGATGGAGGAATCCAGTGTGCTTGATGGTCCAGTTTTGTCGAGAAATCTACAGAAGTGCCCGTCTTTGGTGATTCCTCACGAGTTCCTCTGTCCAATCTCGCTGGAGATCATGACAGATCCTGTTATTGTTGCAACTGGACAGACTTATGAACGGGAAAGCATACAGAAGTGGCTGGATTCAGATCATCATACCTGCCCAAAGACAGGACAAACTTTAGTCCACTTGTCGCTGGCACCAAACTATGCCCTTCGCAACCTAATTCTGCAATGGTGCGAGAAGAACCAGTTTGAGTTGCCCAGAAAGGATATTAAAGCAGGCTCTAATGGCTCCTCCATTCAAGTCAAACAGAAAATCTCTTCTTTGGTCCAAAACCTATCATCATCTCAACCAGATGTGCAGAGAAAGGCCATTATGAAGATTCGGATGCTAGCTAAAGAGAACCCAGATAACAGAATTCGTATTGCCAACAGAGGAGGAATCCCTCCTCTGGTTCAACTCCTGTCCTATCCAGATTCCAAGCTTCAAGAACACACTGTAACAGCCCTTTTGAACTTGTCAATTGATGAGGCAAACAAAAGACTCATAGCTAGAGAAGGAGCCATTCCAGCTATAATTGAAATTCTGCAGAATGGAACAGACGAGGCCAGAGAAAACTCTGCTGCAGCCCTCTTCAGCTTGTCAATGCTCGACGAGAACAAAGTAATGATTGGGTCTTTAAATGGGATCCCTCCCTTGGTAAACCTCCTGCAGAATGGAACAACCAGAGGGAAGAAGGATGCAGCCACTGCCTTGTTTAACCTGTCACTCAACCAATCCAATAAGTCGCGAGCCATCAAGGCAGGTATCATACCAGCATTACTTCATCTGCTTGAGGATAAAAACCTGGGAATGATCGATGAAGCTCTCTCAATTTTACTGCTTTTAGTATCACATCCTGAAGGGCAGACTGAAATTGGAAGGCTATCGTTCATTGTAACTCTGGTTGAAATCATGAAAGATGGGACCCCAAAGAACAAGGAGTGTGCCACATCAGTCCTCCTTGAGCTGGGTTTGAACAATTCATCTTTCATTTTGGCTGCACTGCAGTATGGTGTGTATGACCATCTGGTAGAGATTATGAGATGCGGAACCAACAGAGCCCAGAGAAAAGCAAATTGTCTTCTGCAACATATGTGCAAATGTGAACACATCCCATGGAACTTCAATGTAGGAGCCTAG 1926 0.4517 MEGETGEKGSVCGSSEGDVIGEMMEVIENVGSYVGFRRTQRKESLNLVRRLKLLVPLLEELRELGTAAVSGEALGCLARLKKALVSAKKLLKNCNYGSKIYLAHESEAVAVRFHAVYDKLNQALDDLPYNDLGISDEVKEQVELMRMQLKRAKRRTETQDIELAMDLMVVFSKTDDRNADTAILERLASKLELRTVADLKVETVAVRKLVKERAGLSAEASQQIVELLGKFKKLAGMEESSVLDGPVLSRNLQKCPSLVIPHEFLCPISLEIMTDPVIVATGQTYERESIQKWLDSDHHTCPKTGQTLVHLSLAPNYALRNLILQWCEKNQFELPRKDIKAGSNGSSIQVKQKISSLVQNLSSSQPDVQRKAIMKIRMLAKENPDNRIRIANRGGIPPLVQLLSYPDSKLQEHTVTALLNLSIDEANKRLIAREGAIPAIIEILQNGTDEARENSAAALFSLSMLDENKVMIGSLNGIPPLVNLLQNGTTRGKKDAATALFNLSLNQSNKSRAIKAGIIPALLHLLEDKNLGMIDEALSILLLLVSHPEGQTEIGRLSFIVTLVEIMKDGTPKNKECATSVLLELGLNNSSFILAALQYGVYDHLVEIMRCGTNRAQRKANCLLQHMCKCEHIPWNFNVGA* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0317 641 FunFam RING-type E3 ubiquitin transferase 16 130 - -
Vvi3g0317 641 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 476 518 IPR000225 GO:0005515
Vvi3g0317 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 334 IPR013083 -
Vvi3g0317 641 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 436 IPR000225 GO:0005515
Vvi3g0317 641 Coils Coil 135 159 - -
Vvi3g0317 641 SMART Ubox_2 263 326 IPR003613 GO:0004842|GO:0016567
Vvi3g0317 641 FunFam RING-type E3 ubiquitin transferase 339 633 - -
Vvi3g0317 641 SMART arm_5 465 505 IPR000225 GO:0005515
Vvi3g0317 641 SMART arm_5 424 464 IPR000225 GO:0005515
Vvi3g0317 641 SMART arm_5 506 546 IPR000225 GO:0005515
Vvi3g0317 641 SMART arm_5 383 423 IPR000225 GO:0005515
Vvi3g0317 641 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842|GO:0016567
Vvi3g0317 641 SUPERFAMILY ARM repeat 354 631 IPR016024 -
Vvi3g0317 641 Gene3D - 16 130 IPR036537 GO:0007166
Vvi3g0317 641 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Vvi3g0317 641 Pfam Armadillo/beta-catenin-like repeat 466 504 IPR000225 GO:0005515
Vvi3g0317 641 Pfam Armadillo/beta-catenin-like repeat 507 541 IPR000225 GO:0005515
Vvi3g0317 641 Pfam Armadillo/beta-catenin-like repeat 383 422 IPR000225 GO:0005515
Vvi3g0317 641 Gene3D - 340 634 IPR011989 -
Vvi3g0317 641 SUPERFAMILY RING/U-box 260 334 - -
Vvi3g0317 641 PANTHER U BOX DOMAIN-CONTAINING 41 628 - -
Vvi3g0317 641 Pfam U-box domain 260 331 IPR003613 GO:0004842|GO:0016567
Vvi3g0317 641 FunFam RING-type E3 ubiquitin transferase 259 334 - -
Vvi3g0317 641 CDD RING-Ubox_PUB 261 313 IPR045210 -
Vvi3g0317 641 CDD MLKL_NTD 18 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0317 Vvi-Chr3 2620579 2622895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0317 19 633 U-box Gene Family AT5G42340 62.439 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0317 - - vvi:100250244 1216.45