Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0311 ATGCTTGGAAGGACGAGGACCGAACGTCGAATCTTTGGGCTCCGGAGGAGCAGGACATCAAAGAAGAGGACAATTGTATTTGGCCTGAAATCGAGTAATGGCAGTAGAGGGGTGCTTCTCAAGCTACTCAGTTCAGTAGTCGTGACTGGCGATGAGGTGCTTGCTGTTCATGTACAAGAACCCGAGCCAGATGATACTTTTGACTTGAACACCTTCCACATCCATGAGGACCTCTGCAAGTCCAAGCAGGTGGATTTCCATGTTAAGGTTTGTGTAGGAGAGTCTTACATTTCTGAGTTAACCCATCAGGTTCGAGTTAGCTTTGCTACCATACTTGCCCTTGGATGCAGCAGTTCAAGGCCGGATGACTCAATTGTTGCTAATTGCCTGAAAAAATTGCCTCCCACTTGTACTCTTCTGGTTACGGACAATGGAGGAAGAATACTAATCCAGAGGCCAGGAACTTCTCAACAAGGCTCTAAAACTGAAGTCTTTCAATCTACTGTATCTTCTTCTACAACACACATGTACCTTAATAGAACAGGAACCCCCCATCATTTTCGGAAGTCATTGACCATGCCATCTCCCTCAACATCAACAACAACCAGGGAAGCAGATAACAATGGACAGAAAATTTCCAAGATGACAATGCAGCTTCCCGACTTCATGGAGGAGAAACTGTTCCAAAGGTTGGCACTTCTAGAAGCAAAGGGACTAGGCAAGAGGTTCACATCATCAGAGCTGAAGCTTGCAACCAGAGATTTCAGCCCTGAAATGGTGATAGGAGAAGGTGGGCACAGTAAAGTGTACCGAGCCAACCTTGGGGATGGTCGACTTGCAGCTGTGAAAGTCCTCAAGCCCACTCGGTGGTATGCAGAGGATCTCCTCCAAGAAGTAGAGATATTAAGTGATGTAAACCATGAGAACATAGTTCAGATTATTGGGTACTGCTCTAACAGAGAGATGCATGCAGTTGTTTATGATCTACTAAAGGGAAGCTTGAAACAGAAACTGAGGCAACTCAGGTGGAAAGAAAGGATGGGGGTTGCTATTGGTGTGGCAAAGGCACTGGAGTACCTCCATCATTCTTGTGACCCCCCCATTATTCACAGAGATGTGAAGTCATCTAATGTCCTACTCTCCGAAAATTGTCACCCACAACTTTCAGATTTTGGATCAGCAATGGTATATAATAGAGCACAGCAAGTTTCAGCAAAAGTAAAGCCGCTTCGAGTTGTTGGGACCTTTGGGTACTTGGCCCCAGAATACATGATGTATGGCAAGGTAGATGAGAAGGTAGATGTCTACTCCTATGGGGTTGTGCTTCTGGAACTCATCTCTGGGAAAGAGGCTATTCAAACAAATCAGGCGTCTAATCACGAAAGCTTAGTACTCTGGGCAAGGTCTTTACTCAGCTGTGGCCTATGTGATCGTCTGATAGATCCCAACCTGAAGGACGACTACAATAAGGAAGAGATGAAAACGATGGTGGTTGCAGCACGCCTCTGCCTCATGCATTCGTCTTCTAGAAGGCCAACAATGAAGATGATACTGCAATTGTTTGAGGAGCCAGAGTACTGGCTAAAGATGCAGAGGGACAGAGAGGAGCTCCTCAAGGGAATTAGTTTCAAAGGTGAAACAGGCCAGTGGAGACATGATGACTTATTCACAAATGATACTCTGGTTGCAGACGATACCTAG 1701 0.4574 MLGRTRTERRIFGLRRSRTSKKRTIVFGLKSSNGSRGVLLKLLSSVVVTGDEVLAVHVQEPEPDDTFDLNTFHIHEDLCKSKQVDFHVKVCVGESYISELTHQVRVSFATILALGCSSSRPDDSIVANCLKKLPPTCTLLVTDNGGRILIQRPGTSQQGSKTEVFQSTVSSSTTHMYLNRTGTPHHFRKSLTMPSPSTSTTTREADNNGQKISKMTMQLPDFMEEKLFQRLALLEAKGLGKRFTSSELKLATRDFSPEMVIGEGGHSKVYRANLGDGRLAAVKVLKPTRWYAEDLLQEVEILSDVNHENIVQIIGYCSNREMHAVVYDLLKGSLKQKLRQLRWKERMGVAIGVAKALEYLHHSCDPPIIHRDVKSSNVLLSENCHPQLSDFGSAMVYNRAQQVSAKVKPLRVVGTFGYLAPEYMMYGKVDEKVDVYSYGVVLLELISGKEAIQTNQASNHESLVLWARSLLSCGLCDRLIDPNLKDDYNKEEMKTMVVAARLCLMHSSSRRPTMKMILQLFEEPEYWLKMQRDREELLKGISFKGETGQWRHDDLFTNDTLVADDT* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0311 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 368 380 IPR008271 GO:0004672|GO:0006468
Vvi3g0311 566 Gene3D Phosphorylase Kinase; domain 1 232 328 - -
Vvi3g0311 566 Gene3D Transferase(Phosphotransferase) domain 1 329 539 - -
Vvi3g0311 566 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 229 329 - -
Vvi3g0311 566 ProSiteProfiles Protein kinase domain profile. 255 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0311 566 FunFam Os02g0194400 protein 330 526 - -
Vvi3g0311 566 SMART serkin_6 255 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0311 566 MobiDBLite consensus disorder prediction 180 211 - -
Vvi3g0311 566 Pfam Protein kinase domain 258 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0311 566 ProSitePatterns Protein kinases ATP-binding region signature. 261 283 IPR017441 GO:0005524
Vvi3g0311 566 SUPERFAMILY Protein kinase-like (PK-like) 241 524 IPR011009 -
Vvi3g0311 566 PANTHER OS08G0249100 PROTEIN 161 531 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0311 Vvi-Chr3 2591511 2593945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0311 243 522 Trihelix Transcription Factor Family AT5G38560 41.781 4.34e-63 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vvi3g0311 Pkinase 1.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0311 - - vvi:100243617 1103.58