Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0302 ATGGCAAGGAATTGGCAGAAGATGGCTGCCATCAGGAGGAAAAGAATCATATTGCCAAGAACTAGTGGAGAAGTGGATGCAGACGTGGCTGATAAGGGCCACTTTGTGGTGTACACTTCTGATAGAATACGCTTTGTAGTTCCCTTGGTTTATCTTGACAATGTTATCTTCAGAGAGCTCTTTCAAATGGCAGAAGAGGAGTTTGGGCTGCCAGGAAATGGCCCTATCATACTGCCATGTGATGCAGTTTTCATGGAGTATGCAGTCTCTTTGATTCAAAGACATGTAGCTAAAGATCTCGAGAAAGCATTGCTCATGTCCATAGCTGCAGATCGCTGCTCATCATCTTCATATTTCCATCAAGATCAATCCAACCCACATACTACTTCATCAAGAGCTGAGAAGGGCCATTTTGTTGTCTACACAATAGACCAGACCCGGTTTGTGTTTCCCATAGTGTATCTCAGCAACCACATCTTCAGAGAGCTCTTCAAGATGTCTGAGGAAGAGTTTGGATTGCCCAGAGATGGACCCATCATGCTGCCATGCGATGCGGTCTTTATGAACTATGTAGTGTTCTTGATAAAGCGGCGTGTGACTAAAGACATGGAGAAAGCTCTGCTCATGTCCATGGCTACTAGTCAATGCTCACGGTGTCATTCTCTTTTTCAAGAAGAAAGCAGTCAGCATGTGCTTCTCCGTGGCTTCTGA 711 0.4487 MARNWQKMAAIRRKRIILPRTSGEVDADVADKGHFVVYTSDRIRFVVPLVYLDNVIFRELFQMAEEEFGLPGNGPIILPCDAVFMEYAVSLIQRHVAKDLEKALLMSIAADRCSSSSYFHQDQSNPHTTSSRAEKGHFVVYTIDQTRFVFPIVYLSNHIFRELFKMSEEEFGLPRDGPIMLPCDAVFMNYVVFLIKRRVTKDMEKALLMSMATSQCSRCHSLFQEESSQHVLLRGF* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0302 236 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 124 IPR003676 GO:0009733
Vvi3g0302 236 Pfam Auxin responsive protein 115 194 IPR003676 GO:0009733
Vvi3g0302 236 Pfam Auxin responsive protein 4 92 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0302 Vvi-Chr3 2536233 2541489 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0302 1 94 Calmodulin-binding Proteins AT4G34750 34.694 9.93e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0302 - - peu:105111046 241.891