Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0301 ATGATCAATCCCAAGAAACTCATCAAGATGGCAAGGGAGTGGCAGAAGGTAGCTGCCATCAGGAGGAAGAGAATTTCTCTACCAAGAACCAGTCAGTATTTGGGTGCTGGCCATTGTAGTACATCATCAGTTGCTGATAAGGGCCATTTTGTTGTCTACACAGCTGACCAACGACGATTCATGATTCCATTAGTTTATCTCAACAGCGAGATCTTCAGAGAGCTCTTTGAGATGTCTGAAGAGGAGTTTGGGCTGCCAAGTGACGGACCTATCACACTTCCTTGTGACTCATTCTTCATGGAGTACATCCTCTTTTTGGTCCAGAGAGGTGTAGCTAAAAATCTGGAGAAAGCTTTGCTTACCTCAGTTGCTCACACTCAGTCCTCATCTGCTATCTTTTCCCAACAAGAACAGATGAACTCGAGATTACTTGTTTGTAGTTACTGA 447 0.4407 MINPKKLIKMAREWQKVAAIRRKRISLPRTSQYLGAGHCSTSSVADKGHFVVYTADQRRFMIPLVYLNSEIFRELFEMSEEEFGLPSDGPITLPCDSFFMEYILFLVQRGVAKNLEKALLTSVAHTQSSSAIFSQQEQMNSRLLVCSY* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0301 148 Pfam Auxin responsive protein 6 105 IPR003676 GO:0009733
Vvi3g0301 148 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 138 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0301 Vvi-Chr3 2533266 2533712 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0301 6 109 Calmodulin-binding Proteins AT4G34750 29.524 7.98e-13 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0301 - - vvi:100267542 294.664