Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0300 ATGATCAGTGCCAAGAAGCTCATCAAAATGGCAAGGAAGTGGCAGAAGATGGCTGCCATCAGGAGGAAAAGAATCTCATTGCCTAGAACTAGTAGAGAAGTGGATGCAGAAAGTTGCAGTACATCATCAACTGCTGAAAAGGGCCATTTTGTTGTATACAGTGCTGATGAGAGCCGCTTTGTTGTGCCCTTACCATATCTCAACAGCAACATCTTTAGGGAGCTCTTCAAGATGTCTGAAGAAGAGTTTGGACTGCCCAGCAATGGCCCCATCACTTTGCCCTGCGATGCAGTCTTCATTGAGTATATAATCTCTCTGGTTCAACAATCCATTGCCAAAGACCTAGAGAAAGCATTGCTCACAGCCATAGCAACCGGGCGCTGCTTATCAACCTCCAATATCTGTCAAGAACAAGGAAACCAACAATTGCTAATGGCTGCCCTTGGAAGGAAAAGGATCTCATTACAAAGAATCAACAAGGAAAGTTGCAGTACATCAGTGGCTAATAAAGGCCATTTTGTTGTGTACACTGCTGATCAGAGGTGCTTTATGATTCCCTTGGTGTATTTCAGCAATAACATCTTCAGAGAGCTCTTCAAGATGTCTGAGGAGGACTTTGAACTGCCTAGCAATGGGCCCATAACATTGCCTTGTGATTTAGTCTTCATGGAGTACATAATCCCACTCATCCAACAAGGCATGGCTAAAGACATTGAGAAAGCTTTGCTATTTTCAATTGCAACCAGTCGCTGCTCACTGTCCTCTTCCCATCAAGGACATATGGGCCACCAGTTACTTCTTTGTGGCTACTGA 813 0.4428 MISAKKLIKMARKWQKMAAIRRKRISLPRTSREVDAESCSTSSTAEKGHFVVYSADESRFVVPLPYLNSNIFRELFKMSEEEFGLPSNGPITLPCDAVFIEYIISLVQQSIAKDLEKALLTAIATGRCLSTSNICQEQGNQQLLMAALGRKRISLQRINKESCSTSVANKGHFVVYTADQRCFMIPLVYFSNNIFRELFKMSEEDFELPSNGPITLPCDLVFMEYIIPLIQQGMAKDIEKALLFSIATSRCSLSSSHQGHMGHQLLLCGY* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0300 270 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 141 IPR003676 GO:0009733
Vvi3g0300 270 Pfam Auxin responsive protein 145 229 IPR003676 GO:0009733
Vvi3g0300 270 Pfam Auxin responsive protein 12 106 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0300 Vvi-Chr3 2528421 2532361 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0300 3 109 Calmodulin-binding Proteins AT4G34750 30.556 2.13e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0300 - - peu:105111046 285.419