Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0298 ATGGCAAGGAAGTGGCAGAGGATAGCAGCCCTTGGAAGGAAAAGAATTTCTTCATCAAGAACAAATAACAATGAGGATGCAAAAAGTTGCATTGCATCAGTGGCAAATAAAGGCCATTTTGTTGTGTACACTGCTGATCAGAGGCGCTTTATGATTCCCTTGGTGTTTCTCAGCAATAACATCTTCAGAGAGCTCTTCAGGATGTCTGAGGAGGAGTTTGGACTGCCTAGCAATGGGCCGATAACATTGCCTTATGATTCAGTCTTCATGGAGTACATAATCCCACTCATCCAACGAGGCATGGCTAAAGACATTGAGAAAGCTTTGCTAATTTCAATTGCAACCAGTCGCTGCTCACTGTCATCTTCCCATCAAGGACAAATGGGCCATCAGTTACTTCTTTGTGGCTACTGA 414 0.4372 MARKWQRIAALGRKRISSSRTNNNEDAKSCIASVANKGHFVVYTADQRRFMIPLVFLSNNIFRELFRMSEEEFGLPSNGPITLPYDSVFMEYIIPLIQRGMAKDIEKALLISIATSRCSLSSSHQGQMGHQLLLCGY* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0298 137 Pfam Auxin responsive protein 4 96 IPR003676 GO:0009733
Vvi3g0298 137 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 127 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0298 Vvi-Chr3 2524184 2524597 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0298 8 104 Calmodulin-binding Proteins AT3G43120 28.431 2.08e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0298 - - vvi:100265824 274.633