Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0297 ATGGCAAGGAAGTGGCAGAAGATGGCTGCCCTTGGAAGGAAAAGGATCTCATTACAAAGAATCAACGAGGGTAAACTCATCAAGATGGCAAGGAAGTGGCAGAAGATAGCTGCCATGAAGAGGAAGAGAATCACTCTACCAAGAACAGATGAGATTTTGGATGCTGATGGTTGTAGTACATCCGCAGTGGCAGATAAAGGCCATTTTGTTGTTTTCAGTTCTGATAAGAGACGCTTTGTGATTCCATTGGTGTATCTCAACAATGAAATCTTCAGAGAGCTTTTGCAAATGTCTGAGGAGGAGTTTGGAATACAAAGTGAAGGCCCCATCATATTGCCATGTGATTCAGTCTTCATGGACTATGTAATCTCATTCATCCAACATGGTGTAGCAAAAGATTTGGAGAGAGCTTTGATTATGTCTATAGCTTCCAGTAGCTGTTCTGCTTCTTCACACATCCTTCAAGGACATAACAATGAACAAATGCTCTTATGTGCTTTCTGA 504 0.4147 MARKWQKMAALGRKRISLQRINEGKLIKMARKWQKIAAMKRKRITLPRTDEILDADGCSTSAVADKGHFVVFSSDKRRFVIPLVYLNNEIFRELLQMSEEEFGIQSEGPIILPCDSVFMDYVISFIQHGVAKDLERALIMSIASSSCSASSHILQGHNNEQMLLCAF* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0297 167 Pfam Auxin responsive protein 32 125 IPR003676 GO:0009733
Vvi3g0297 167 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 22 160 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0297 Vvi-Chr3 2518613 2520744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0297 25 126 Calmodulin-binding Proteins AT4G34750 30.097 1.48e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0297 - - vvi:100248641 272.707