Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0296 ATGGCAAGGAAGTGGCAGAGGATAGCAGCCCTTGGGAGGAAAACAATTTCTTCACCAAGAACCAAAGTTGATGTTGATGCAGACAATTGTAGCACATCAGTGGCTGACAAAGGCCATTTTGTTGTGTATACCACTGATAAGAGGCGGTTTATGATTCCCTTGGCATATCTCAGCAATAATATCTTAAGAGAGCTCTTCAAGATGGCTGAGGAGGAGTTTGGACTGCAAAGCAATGGGCCTATAACTCTCCCTTGTGATTCAGTCTTCATGGAGTACATACTCCCACTCATCCAACGAGGTGTAGCTAAAGATGTGGAGAAAGCCTTGCTCTTCTCCCTTGCCACCAGTTGCTGCTCACTATTGTCTTCCCATCAAGAACATATAAGCCAACAATTACTTAAACTCATCAAGATGGCAAGGAAGTGGCAGAAGATAGCTGCCATGAGGAGGAAGAGAATCTCTCTACCAAGAATAGATGAGGTTTTGAATGCTGACTGTTGTGGTACATCAGCAGTGGCAGAGAAGGGCCATTTTGTTGTTTACAGTTCTGATAAGAGACGCTTTGTGATTCCGTTGGTGTATCTCAACAATGAAATCTTCAGAGAGCTTTTGCAAATGTCTGAGGAAGAGTTTGGAATACAAAGTGAAGGCCACATCATATTGCCATGTGATTCAGTCTTCATGGACTATGTAATCTCATTCATCCAACGCAGTGTAGCAAAAGACTTAGAGAGAGCTTTGATTATGTCTATAGCTTCCAGTAGCTTTTCTGCTTCTTCACACATCCTTCAAGGACACAACAATGAACAAATGCTCCTATGTGCTTTCTGA 831 0.4272 MARKWQRIAALGRKTISSPRTKVDVDADNCSTSVADKGHFVVYTTDKRRFMIPLAYLSNNILRELFKMAEEEFGLQSNGPITLPCDSVFMEYILPLIQRGVAKDVEKALLFSLATSCCSLLSSHQEHISQQLLKLIKMARKWQKIAAMRRKRISLPRIDEVLNADCCGTSAVAEKGHFVVYSSDKRRFVIPLVYLNNEIFRELLQMSEEEFGIQSEGHIILPCDSVFMDYVISFIQRSVAKDLERALIMSIASSSFSASSHILQGHNNEQMLLCAF* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0296 276 Pfam Auxin responsive protein 4 96 IPR003676 GO:0009733
Vvi3g0296 276 Pfam Auxin responsive protein 141 234 IPR003676 GO:0009733
Vvi3g0296 276 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 134 269 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0296 Vvi-Chr3 2515009 2517155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0296 1 99 Calmodulin-binding Proteins AT4G34750 29.000 1.27e-10 57.0