Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0289 ATGGAGGACATGACAGCAGAGCTTGAACTACCCGGGTTTCGGTTTCATCCTACCGAGGAAGAACTCCTGGACTTCTACCTGAAAAATATCATTTTTGGGAAGAGGCAGAGGTTTGATATAATTGGACTGCTCAACATATATCATTATGATCCTTGGGCTTTGCCAGGATTGGCGAAGATTGGCGAGAGGGAGTGGTACTTTTTTGTTCCTAGAGATAGGAAGCATGGCAATGGAGGAAGGCCTAACAGGACCACTGAAAATGGATTCTGGAAGGCCACAGGCTCAGACAGAAGAATACTGAATTCTTCTGATCCTAAAAGGATCATTGGCCTGAGAAAGACTCTTGTGTTCTACGAAGGAAGAGCACCTCATGGAAAAAAAACTGATTGGGTCATGAACGAATATCGCCTCCCAGACAACTGTTCCATACCAAAGGACATAGTGTTGTGTAAGATATATAGGAAGGCAACATCCTTGAAGGTCCTGGAACAAAGGGCAGCAATGGAGGAAGAGATGAAGTCAGTTCATGGATCACCTTCATCTCCAATGTCATCAATGGATGGTATCTCATTCTGCAGCTCTCAACAAGAAAAGCCGGGGCCATCGATGCCCATGCAGGGCATGGTTTTCAAGAAGGAAGTAGTAGAAGAGAAGAAGTATGAAAATGGCCAGGAGGGTGCCAAAGGGTCTTGCTCATCTCTGCAGTTGCCATCAGGGAAGTTGACTGAGCTCCAAGTTCCAAAATCAGGCACAGACTGGAGCCAGGACCCCATTTGGACCCAACTAGGCAGCCCTTGGCTTCAAAATCTGAACACTTACACCAACATTCTGAATTTCTAA 840 0.4583 MEDMTAELELPGFRFHPTEEELLDFYLKNIIFGKRQRFDIIGLLNIYHYDPWALPGLAKIGEREWYFFVPRDRKHGNGGRPNRTTENGFWKATGSDRRILNSSDPKRIIGLRKTLVFYEGRAPHGKKTDWVMNEYRLPDNCSIPKDIVLCKIYRKATSLKVLEQRAAMEEEMKSVHGSPSSPMSSMDGISFCSSQQEKPGPSMPMQGMVFKKEVVEEKKYENGQEGAKGSCSSLQLPSGKLTELQVPKSGTDWSQDPIWTQLGSPWLQNLNTYTNILNF* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0289 279 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Vvi3g0289 279 FunFam NAC domain-containing protein 67-like 18 159 - -
Vvi3g0289 279 Gene3D NAC domain 18 159 IPR036093 GO:0003677|GO:0006355
Vvi3g0289 279 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 202 - -
Vvi3g0289 279 SUPERFAMILY NAC domain 10 155 IPR036093 GO:0003677|GO:0006355
Vvi3g0289 279 ProSiteProfiles NAC domain profile. 9 155 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0289 Vvi-Chr3 2465798 2466851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0289 4 276 NAC Transcription Factor Family AT2G17040 59.507 1.38e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi3g0289 NAM 1.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0289 - - vvi:100241839 563.533