Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0275 ATGGGCTGCTGTGAATCGTCGTTCCTTACAGAGACACACCCAGAAAAAGATGACCAGCATCACCACAACAACAGCCACAATACCCAGAACCCACCCTTCAGCCCTCCCTCCCCTGCCGACGGGGGAGTCCCATCCTTCTCCGAGTTCTCCTTCTCGGACCTTAAGGCAGCTACTAATAACTTCAGCTCTGACTCCATCGTCTCCGAGAGCGGCGAGAAGGCCCCCAATATCGTCTACAAGGGTCGCCTCCAGAACCGTCGGTGGATCGCCGTGAAGAAATTTACGAAGATGGCGTGGCCGGACCCGAAGCAGTTCGCTGAGGAGGCTTGGGGTGTTGGGAGGTTGCGGCATCAGAGACTTGCCAATCTGATTGGTTATTGCTGTGATGGTGATGAGAGGTTGCTTGTTGCTGAGTACATGCCAAATGATACTCTTGCTAAGCATTTATTCCACTGGGAAAATCAAACCATTGAATGGGCCATGCGTTTGAGAGTAGCCCTTTTCATTGCTGAAGCCTTGGATTTTTGTAGTACTGAAAGCCGTTCATTGTACCACGATCTGAATGCATATAGGGTTCTCTTTGACGAGGATGGTGACCCACGGCTTTCATGTTTTGGCTTGATGAAAAATAGTAGAGATGGGAAAAGTTATAGCACAAATCTTGCCTACACACCTCCGGAATATCTAAGAAATGGAAGGGTCACCCCTGAAAGTGTTATTTACAGCTTTGGTACTGTCCTTTTGGATCTGCTAAGTGGAAAGCATATCCCGCCAAGTCATGCTCTTGATTTGATAAGGGACAAAAATATCATCCTTCTGATGGACTCACATTTGGAGGGAAACTTCTCTACAGAAGAAGCAACAACCGTTGTTGGTCTTGCCTCTCAATGTTTGCAATATGAACCTAGAGAGCGGCCTAATACAAAGGACCTTGTTGCAACACTTGCCCCACTGAAAACCAAACCTGATGTTCCATCTTACGTCATGCTTGGGATTCCAAAGCATGAGGATGCCCCACCAACCCCACAGCACCCTCTATCACCAATGGGTGAGGCCTGTTCACGACTGGACCTCACAGCAATCCATCAGATCTTGGTTATGACACACTACAGAGATGATGAAGGAACCAATGAGTTGTCCTTCCAAGAATGGACCCAACAGATGAGAGATATGCTAGAAGCAAGGAAGCGTGGGGACTTTGCATTCCGTGACAAGGATTTTAAAACTGCCATTGATTGTTATTCTCAGTTTGTAGATGTGGGAACCATGGTGTCCCCAACTGTTTATGCACGGCGCAGTCTATGCTATCTGCTGTGTGACCAACCAGATGCTGCCCTTAGAGATGCAATGCAAGCCCAATGCGTCTACCCAGACTGGCCTACGGCCTTCTACATGCAATCAGTGGCTCTTGCCAAATTGGACATGCACAAGGATGCTGCTGACATGCTAAATGAAGCTGCTGGACTTGAAGAGAAGAGGCAAAAAGGTGGGAGAGGATCATGA 1503 0.4817 MGCCESSFLTETHPEKDDQHHHNNSHNTQNPPFSPPSPADGGVPSFSEFSFSDLKAATNNFSSDSIVSESGEKAPNIVYKGRLQNRRWIAVKKFTKMAWPDPKQFAEEAWGVGRLRHQRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALFIAEALDFCSTESRSLYHDLNAYRVLFDEDGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDLIRDKNIILLMDSHLEGNFSTEEATTVVGLASQCLQYEPRERPNTKDLVATLAPLKTKPDVPSYVMLGIPKHEDAPPTPQHPLSPMGEACSRLDLTAIHQILVMTHYRDDEGTNELSFQEWTQQMRDMLEARKRGDFAFRDKDFKTAIDCYSQFVDVGTMVSPTVYARRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVALAKLDMHKDAADMLNEAAGLEEKRQKGGRGS* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0275 500 Pfam Protein tyrosine and serine/threonine kinase 78 315 IPR001245 GO:0004672|GO:0006468
Vvi3g0275 500 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 12 495 IPR045845 GO:0004672|GO:0009742
Vvi3g0275 500 FunFam probable serine/threonine-protein kinase At5g41260 141 332 - -
Vvi3g0275 500 Gene3D Transferase(Phosphotransferase) domain 1 141 331 - -
Vvi3g0275 500 Gene3D Phosphorylase Kinase; domain 1 40 139 - -
Vvi3g0275 500 SUPERFAMILY TPR-like 394 490 IPR011990 GO:0005515
Vvi3g0275 500 ProSiteProfiles Protein kinase domain profile. 64 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0275 500 FunFam probable serine/threonine-protein kinase At4g35230 389 498 - -
Vvi3g0275 500 MobiDBLite consensus disorder prediction 10 24 - -
Vvi3g0275 500 MobiDBLite consensus disorder prediction 1 41 - -
Vvi3g0275 500 FunFam probable serine/threonine-protein kinase At4g35230 37 139 - -
Vvi3g0275 500 Gene3D Tetratricopeptide repeat domain 389 498 IPR011990 GO:0005515
Vvi3g0275 500 SUPERFAMILY Protein kinase-like (PK-like) 42 325 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0275 Vvi-Chr3 2413660 2420140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0275 11 342 Glycoside Hydrolase AT3G07070 33.333 3.59e-47 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vvi3g0275 PK_Tyr_Ser-Thr 6.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0275 K14500 - vvi:100265782 1022.31