Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0257 ATGGAGAAAGTGGTAAAAATCATGGAGAAAGAAGAGGCGGAAGCTGAAGTAGAGATGTGGAAGTACATCTTTGGATTTGTGGAAATGGCTGTAGTGAAGTGTGGCATTGAGCTCGGCATAGCTGATGTCATAGAAAGCCATGCAGGCCCCATCACTCTTTCGTCACTGTCGTCTTCCCTCGGGTGCTCGCCTTCTGGTTTGTACCGGATCATGAGGTTCCTGGTGAACCGGAGAATATTCAAGGAGGTGGCGACAAGCCAAGGCGACACAGGCTATCAGCAGACACCTCTCTCGCGGCGCCTGATGACCCGCAGCGAGAATGGCATGGCTGCCTTACTGTTGCTGGAGAGCAGCCCAGTGATGCTGGCTCCATGGCATGGCCTAAGCGCCCGGCTTCTAGGGAAAGGGAACGCGACGTTCGACGCTGCCCACGGGCAGGATGTCTGGGGCTATGCAGCTTCGCATCCTGCTCACAGTAAGCTCATAAACGATGCGATGGCTTGTGATGCTAGAATGGCGGTTTCCGCCATTGTGAATGGCTGTCCGGAGGTGTTTGATGGGGTGAGCACCCTGGTGGATGTCGGTGGGGGCGATGGCACTGCCCTGAGGACGTTGATCAAGGCCCGTCCATTGATCAGAGGCATCAACTTTGATCTTCCTCACGTTGTTTCCTCCGCCCCTAAATGTAACGGTGTTGAGTATGCCAGTGGGGATATGTTTGACACTGTCCCTAAAGCGGATGCTGCTTTCCTCATGTGGGTTCTACACGACTGGGGAGACGAGGAGTGCATCCAAATTCTAGAAAAATGCAGACAAGCTATTCCTGGGGACAAAGGGAAGGTGATAATAGTGGAAGCCGTGATACAAGAAAACGAAAAAGAAGGTGACAACAATCTTAAAGACGTGGGGTTGATGCTAGACATGGTTATGATGGCTCATACTACTACCGGCAAAGAAAGGACCTTAAAGGAATGGGACTATGTCCTTAAGAAGGCCGGTTTTAATCGATACACCGTGAAACCTATTCGTGCCGTCAAATCTGTCATCGAAGCTTATCCTTAG 1062 0.5141 MEKVVKIMEKEEAEAEVEMWKYIFGFVEMAVVKCGIELGIADVIESHAGPITLSSLSSSLGCSPSGLYRIMRFLVNRRIFKEVATSQGDTGYQQTPLSRRLMTRSENGMAALLLLESSPVMLAPWHGLSARLLGKGNATFDAAHGQDVWGYAASHPAHSKLINDAMACDARMAVSAIVNGCPEVFDGVSTLVDVGGGDGTALRTLIKARPLIRGINFDLPHVVSSAPKCNGVEYASGDMFDTVPKADAAFLMWVLHDWGDEECIQILEKCRQAIPGDKGKVIIVEAVIQENEKEGDNNLKDVGLMLDMVMMAHTTTGKERTLKEWDYVLKKAGFNRYTVKPIRAVKSVIEAYP* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0257 353 Gene3D Vaccinia Virus protein VP39 103 353 IPR029063 -
Vvi3g0257 353 PANTHER O-METHYLTRANSFERASE 29 336 IPR016461 GO:0008168
Vvi3g0257 353 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 351 IPR029063 -
Vvi3g0257 353 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 353 IPR016461 GO:0008168
Vvi3g0257 353 FunFam O-methyltransferase family protein 103 352 - -
Vvi3g0257 353 Gene3D - 4 101 IPR036388 -
Vvi3g0257 353 PIRSF O-mtase 1 353 IPR016461 GO:0008168
Vvi3g0257 353 FunFam O-methyltransferase family protein 3 101 - -
Vvi3g0257 353 Pfam O-methyltransferase domain 125 335 IPR001077 GO:0008171
Vvi3g0257 353 Pfam Dimerisation domain 31 75 IPR012967 GO:0046983
Vvi3g0257 353 SUPERFAMILY "Winged helix" DNA-binding domain 9 104 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0257 Vvi-Chr3 2208415 2209694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0257 31 352 Monolignol Biosynthesis Gene Families AT1G77520 34.706 1.90e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0257 K22588 - vvi:100258846 681.019