Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0256 ATGAACATTTTAACTAAAGACTTAAATAAGGCAACGAGGGACATGAAAACCTTGGAGGAGGAAGAAGAAGCAGAAGTTGGAATTGAGATGTGGAAGTACATATATGGATTTGCTGAAATGGCTGCAGTGAAGTGTGGCATTGAGCTAGGCATAGCTGATGTCATGGAAAGCCATGGAGGCCCCATCACTCTTTCTGCTTTGTCTTCTTCCCTGGGGTGCCCGCCTTCTGGTTTGAACCGGATCATGAGGTTCCTGGTGAGCCGGAGAATATTCAAGGAGGTGGCGACAAGCCAAGGCGATACAGGCTATCAACAAACACCCATGTCACGGTGCCTGATGACGAGCGGAGGAGATGGCATGGCTGCCTTTGTGTTGCTGGAGAGCAGCCCAGTGATGCTGGCTCCATGGCATGGCCTGAGCGCCCGGGTTCTAGGGAAAGGGAACTCAACGTTCGAGGCTGCGCACGGGGATGATATCTGGGGCTATGCAGCTAAAAACCCTGATCACAGCAAGCTTATAAATGATGCAATGGCTTCTAATGCTAGGAGGGTAGTGCCAGCAATGGTGAATGACTGTCCAGAGGTGTTTGATGGGGTGAGCACCCTGGTGGATGTAGGTGGGGGCAATGGCACCGCCCTGCGGACGTTGGTCAAGGCCTGCCCATGGATTAGAGGCATCAACTTTGATCTTCCTCATGTCGTGGCCACTGCTCCTAAATGTAACGATGTTGAGCATGTTGGAGGAAACATGTTCGACAGCGTCCCCAAAGCTGATGCTGTTTTCATCATGAAGGTCCTACATGATTGGGGAGATGAAAAGTGCATCAAGATCCTAGAAAAATGCAGAGAAGCCATTCCGGAGGACAAAGGGAAGGTGGTAATTGTAGAAGCCGTGATTGAAGATGGTGATCCTCAAGGTGATGATCAGAAGCTCAAGGATGTGAAGTTGATGGTAGACATGGTTATGATGGCACATACTACTACAGGCAAAGAAAGGACCTTCAAGGAATGGGACTACGTCCTTCTCAATGCTGGTTTTAGTCGATATACCATAAAACCTATTCGCAATATTGTGCAGTCTATCATTGAAGCATACCCTTAG 1101 0.4886 MNILTKDLNKATRDMKTLEEEEEAEVGIEMWKYIYGFAEMAAVKCGIELGIADVMESHGGPITLSALSSSLGCPPSGLNRIMRFLVSRRIFKEVATSQGDTGYQQTPMSRCLMTSGGDGMAAFVLLESSPVMLAPWHGLSARVLGKGNSTFEAAHGDDIWGYAAKNPDHSKLINDAMASNARRVVPAMVNDCPEVFDGVSTLVDVGGGNGTALRTLVKACPWIRGINFDLPHVVATAPKCNDVEHVGGNMFDSVPKADAVFIMKVLHDWGDEKCIKILEKCREAIPEDKGKVVIVEAVIEDGDPQGDDQKLKDVKLMVDMVMMAHTTTGKERTFKEWDYVLLNAGFSRYTIKPIRNIVQSIIEAYP* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0256 366 FunFam O-methyltransferase family protein 114 365 - -
Vvi3g0256 366 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 366 IPR016461 GO:0008168
Vvi3g0256 366 SUPERFAMILY "Winged helix" DNA-binding domain 21 115 IPR036390 -
Vvi3g0256 366 Coils Coil 1 21 - -
Vvi3g0256 366 Pfam O-methyltransferase domain 136 347 IPR001077 GO:0008171
Vvi3g0256 366 Gene3D Vaccinia Virus protein VP39 117 366 IPR029063 -
Vvi3g0256 366 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 365 IPR029063 -
Vvi3g0256 366 Pfam Dimerisation domain 42 86 IPR012967 GO:0046983
Vvi3g0256 366 Gene3D - 12 112 IPR036388 -
Vvi3g0256 366 FunFam O-methyltransferase family protein 14 112 - -
Vvi3g0256 366 PIRSF O-mtase 8 366 IPR016461 GO:0008168
Vvi3g0256 366 PANTHER O-METHYLTRANSFERASE 40 348 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0256 Vvi-Chr3 2204705 2207438 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0256 42 346 Monolignol Biosynthesis Gene Families AT5G54160 35.443 1.93e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0256 K22588 - vvi:100264018 706.827