Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0251 ATGACCAAAAAACAAAAAAGTCTAAACTACAAGATATGGAGAGAATCGAGCTATGACTTTTGGAGAGATGAGTGCGAGACTGAACGAAAAAGTGGTCCGAGATTTCAGTTCCAGCAGCCGTTGGCGACGGAGGATCCACCGTCTAAGCTGATTGGCCAGTTCTTACACAAACAGAAAGCGTTGGGTGATTTTTCTCTTGATATGGATATGGAGATGGAAGAGCTGAGAAATGAGAGGAAGAAACCTCCGACACCAGAGAGTACCATGCACCCAAAGATGTCGTCCATGGAGATGAAGTTATCGTTTCAACACCTGACCACCGGAGCAGCTGAAATGAGTTCTGAATCCGTTAGAAGATCCTACATGGATAAGGATGTTTCTGATGAAGATGACATTAGACAAGTCAGTTGTGACAATCCAGACGGTGAAGTTTTGAGGTGTACTTCAAACATGGAGTTTCAAAGGAAGTCGAGTTTGTTAAGAAACAAGACCAAGTCAAGGTTGGCAGATGGTCCAGAATATGTAATGAAGTCCGGTTTATTGCCCAAAACACGTCTGTTTCCAAAGTCTGGGGTGTTCAAATCAGGATTGTTGGGGATATCTGAGGAAGAAGAAGAAGATCCTCTTACGATACATCCATTCAAGGGTAGGATTGTTTGGAAACTCAGGTTGTGGAAATGGGAGGTGATGGTTTTGGTATTGATATGTGGTAGATTAGTTTCTGGCTGGGGGATACGGCTCGTGGTTTTCTTTATTGAAAGAAATTTTCTTCTTCGGAAACGGGTTTTGTATTTTGTGTATGGATTGAGGAAGGCAGTTCAGAATTGTCTGTGGTTGGGTCTTGTTCTGATTGCTTGGAATATTATGTTTGATAGGAAGGTTAAGAGGGAGACAAAGAGCAATGCCCTTAAGTATCACCATAAGGATGAGGAGCAGAGTATTTTGGCTGAACTTACGAAGTTTCAGAATGCAGGAATTGCAGTGCCCCCTGAACTCAAGGCAGCCGCCCTCCCGCCATCGGGTCGGAGGGTGATAGGGAGCGGAGGTCTCCAGAAAGGCTCTGTAGTAGAAAGTCTAAGACTTTCAGGCACAATTTCAAAAATGCAAGATGAGGGGATAACAATTGATGACTTGCACAAGCTTAATCATGAGAATGTTTCTGCCTGGAACATGAAGAGGTTAATGCATATGGTGCGACATGAGTCCCTTGCTACACTGGATGAGCAAATTCATGGTTCAACTCACGAGGACGAGCCTGCCACCCAGATTAAGAGTGAAGATGACGCAAAAATTGCCGCAAGGAAAATATTTCACAATGTGGCCAAGCCAAATTGCAAATTCATTTACCTGGAGGACATAATGCGCTTCATGCGAGAAGATGAAGCTTTGAGAACCATGAGTCTGTTTGATCAAGGAGCATCCCACAGTGAGAAAATCAGCAAGTCGGCCCTGAAGAACTGGGTGGTTAATGCTTTCAGAGAAAGGAGAGCACTTGCCTTGACATTGAATGACACAAAAACAGCCGTTAACAAACTTCATCAAATGGTGAATGTTGTAGTTTTCATAATCGTATTGATCATCTCGCTTCTTATACTAGGAATTGCAACAAAGCAATTCATGACCTACTTAAGCTCTCAGCTTCTCCTAGTCGTATTTATATTTGGGAACACCTGCAAAAATATATTTGAAGCCATAATCTTCGTATTCGTGATGCACCCTTTTGATGTGGGCGATCGGTGTGAGATTGATGGAGTTCAGATGGTAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGAGCCGACAACATGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGCCCATTGGCAATTTCTATCGTAGTCCTGACATGGGAGATGCAGTTGAATTCCTCGTCCATATTGCAACTCCAGCAGAGAAGATTGCCATGATAAGACAGAGAATATTAAGTTACATGGAGAGAAAGAAAGACCACTGGGCTCCTTCACCCATGGTTATTATAAAGGACTTGGAGGGTTTGAACCAGCTGAGGATGGCAGTTTGGATGGGCCACAAAATAAACCACCAAAATATGGGGGAGAGGTGGACAAGGAGATACCTTCTGATCGACGAGATAGTCAAAATTCTGAGGGAGGTCGACATTGAGTATCGCATGATACCATTGGACATCAACGTCCGCTCCATGCCCAAGCCATCTCCTGTGACATCCACTCGCCTTCCCCCTTCCTGGACAGCTAGTGGTGGTCGCTGA 2262 0.4403 MTKKQKSLNYKIWRESSYDFWRDECETERKSGPRFQFQQPLATEDPPSKLIGQFLHKQKALGDFSLDMDMEMEELRNERKKPPTPESTMHPKMSSMEMKLSFQHLTTGAAEMSSESVRRSYMDKDVSDEDDIRQVSCDNPDGEVLRCTSNMEFQRKSSLLRNKTKSRLADGPEYVMKSGLLPKTRLFPKSGVFKSGLLGISEEEEEDPLTIHPFKGRIVWKLRLWKWEVMVLVLICGRLVSGWGIRLVVFFIERNFLLRKRVLYFVYGLRKAVQNCLWLGLVLIAWNIMFDRKVKRETKSNALKYHHKDEEQSILAELTKFQNAGIAVPPELKAAALPPSGRRVIGSGGLQKGSVVESLRLSGTISKMQDEGITIDDLHKLNHENVSAWNMKRLMHMVRHESLATLDEQIHGSTHEDEPATQIKSEDDAKIAARKIFHNVAKPNCKFIYLEDIMRFMREDEALRTMSLFDQGASHSEKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHQMVNVVVFIIVLIISLLILGIATKQFMTYLSSQLLLVVFIFGNTCKNIFEAIIFVFVMHPFDVGDRCEIDGVQMVVEEMNILTTVFLRADNMKIVFPNSTLATRPIGNFYRSPDMGDAVEFLVHIATPAEKIAMIRQRILSYMERKKDHWAPSPMVIIKDLEGLNQLRMAVWMGHKINHQNMGERWTRRYLLIDEIVKILREVDIEYRMIPLDINVRSMPKPSPVTSTRLPPSWTASGGR* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0251 753 FunFam Predicted mechanosensitive ion channel 573 622 - -
Vvi3g0251 753 SUPERFAMILY Sm-like ribonucleoproteins 563 622 IPR010920 -
Vvi3g0251 753 PIRSF Memb_At2g17000 309 753 IPR016688 -
Vvi3g0251 753 PIRSF Memb_At2g17000 2 321 IPR016688 -
Vvi3g0251 753 MobiDBLite consensus disorder prediction 734 753 - -
Vvi3g0251 753 Gene3D - 573 622 IPR023408 -
Vvi3g0251 753 Pfam Mechanosensitive ion channel 514 719 IPR006685 GO:0016020|GO:0055085
Vvi3g0251 753 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 307 747 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0251 Vvi-Chr3 2128406 2140641 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0251 12 752 Mechanosensitive Ion Channel Family AT3G14810 49.041 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0251 K22048 - vvi:104878206 1308.51