Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0250 ATGCGCCTACTGTATATTATGAATGAAATTCCAAAAACACCCCTCCCAACCTATCGTTCACCCTACAACAAAAGAAGTACAAGCCTGAATGTATTCTTTGATCAGAGGTTGCTGCTCATCCTGACATTCTCTTACAATGGTTTTTTTTCTGCATTGAAGGTCATAGAACACAAGCCATATGATCACAAAGTTGATGTTTTTAGTTTTGGAATCGTGTTATGGGAGTTGCTAACGGGAAAGCTTCCATATGAGTACTTAACCCTGTTACAAGCAGTTGTCCAAAAGGTAATACAACATAGAGCCCATGTCATCAATAACCATCTAATTTCTTCTAGATGGGTTGGGTTACTTTCCTCAGGATAA 363 0.3857 MRLLYIMNEIPKTPLPTYRSPYNKRSTSLNVFFDQRLLLILTFSYNGFFSALKVIEHKPYDHKVDVFSFGIVLWELLTGKLPYEYLTLLQAVVQKVIQHRAHVINNHLISSRWVGLLSSG* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0250 120 Gene3D Transferase(Phosphotransferase) domain 1 16 119 - -
Vvi3g0250 120 SUPERFAMILY Protein kinase-like (PK-like) 42 98 IPR011009 -
Vvi3g0250 120 Pfam Protein tyrosine and serine/threonine kinase 49 100 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0250 Vvi-Chr3 2125404 2127705 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0250 51 97 MAP Kinase Kinase Kinase AT4G38470 82.000 5.91e-21 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vvi3g0250 PK_Tyr_Ser-Thr 2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0250 - - vri:117909332 87.0409