Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0249 ATGAACTTTACATACAGCAGAGTGCCACGATTTGTCACATATTATAACAATATTCTACTATTCTTTGATCAGAGGTTGCTGCTCATCCTAGCATTCTCTTACAATGGTTTTTTTTCTGCATTGAAGGTCATAGAACACAAGCCATATGATCACAAAGTTGATGTTTTTAGTTTTGGAATTGTGTTATGGGAGTTGCTAATTGGAAAGCTTCCATACGAGTACTTAACCCCGTTACAAGCAGTTGTCCAAAAGGTAATACAACATAGAGCCCATGTCATCAATAATATTGATCATGTCACCAATAACCATCTAATTTCTTCTAGATGGTGGGTTGGGTTACTTTCCTCAGGATAA 354 0.3644 MNFTYSRVPRFVTYYNNILLFFDQRLLLILAFSYNGFFSALKVIEHKPYDHKVDVFSFGIVLWELLIGKLPYEYLTPLQAVVQKVIQHRAHVINNIDHVTNNHLISSRWWVGLLSSG* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0249 117 Gene3D Transferase(Phosphotransferase) domain 1 33 112 - -
Vvi3g0249 117 Pfam Protein tyrosine and serine/threonine kinase 38 88 IPR001245 GO:0004672|GO:0006468
Vvi3g0249 117 SUPERFAMILY Protein kinase-like (PK-like) 32 87 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0249 Vvi-Chr3 2122899 2124044 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0249 40 86 MAP Kinase Kinase Kinase AT4G38470 82.000 5.17e-22 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vvi3g0249 PK_Tyr_Ser-Thr 5.5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0249 - - vri:117909332 88.5817