Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0248 ATGCCAAAGAGCACTCATCCAAATCTTGCAGAGTTGCTCGAGAGGTGCTGGCAACAAGATCCAACATTAAGACCCGACTTCTCTGAAATTATAGAGATTCTTCAGCAAATAGCTAAAGAGGTTGGAGATGAAGAAGATCGGCCCAAGGTGCAATCTTCTAGCGGATTCCTATCTGTTCTCAGACGCGCCATCACTGACCATAAAGAAAATCATGATTATTCTCGTGATGTGAAAACATAG 240 0.4292 MPKSTHPNLAELLERCWQQDPTLRPDFSEIIEILQQIAKEVGDEEDRPKVQSSSGFLSVLRRAITDHKENHDYSRDVKT* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0248 79 SUPERFAMILY Protein kinase-like (PK-like) 2 44 IPR011009 -
Vvi3g0248 79 Gene3D Transferase(Phosphotransferase) domain 1 1 78 - -
Vvi3g0248 79 Pfam Protein tyrosine and serine/threonine kinase 2 34 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0248 Vvi-Chr3 2122136 2122801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0248 1 63 MAP Kinase Kinase Kinase AT4G35780 57.143 4.33e-19 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vvi3g0248 PK_Tyr_Ser-Thr 2.9e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0248 - - vri:117909332 128.642